Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00977 ATGGCTCCTCAAAGCTTCTTCTCCGTCCTTCTTCCCATCTCCTTCTTCCTTCATCTCCATTTCTCCTCCCCAAACCCCACAATTTGCCATTCCAACGACTCCAAGGCCTTGCATGACTTCCATAGCACTTTTAGTTCTCAAATCGATGGATTGCTCACCAACTGTTCGACGAAATGCTGCACTTGCATTGGCATCACTTGTGACTCCTCTGGAAGAGTTGTGAAGATGGAGCTTGATGGGATGAAGCTCATTGGTCCATTACCAAACTCAATAGCAAGATTGGAGCACCTCAGAGTTCTTAATCTGTCCTCTAATTCCCTCACTGGGTTTATTCCCGTTGCTCTGTTTCAGCTCCCTTACTTGGAAGTTCTTGATCTCAGTTTCAATCAGTTCTTGGGGAGCATCTCTACAGGTACCATAAACCTTCCTTCCCTTCGGGTTCTTAATGTTTCTCATAATTCATTCAATGGTGTTCTTCCTCTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGGTTCTGAATCTTGGTTTCAATAATTTCATTGGTATGGTTCCTTTTCAACTTGCCGAATGTGTTTCCTTGAAGAGACTGCATGTGGAATCAAATTTTATCAGGGGTGGGATACCTGATGAGGTCTCTGGATTGAGAAAATTGACCCATCTTTTTGTTCAGAATAACAAGCTTTCTGGTTTTTTGAATAGTGTTGTTGGGAATCTAACAAGCCTTGTTCAGTTGGATTTGTCATCTAATGAGTTTTTTGGAGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTCCTTTGTTGCTGTGTCAAATAGGTTTAGTGGGAAGATACCCAATTCATTGTCAAACTCTCCTTCACTCACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTTCAGCAATGACAAGCCTGGTTACACTTGACTTAGGGACTAATAGGTTTCATGGATCTATACCTAGCAATCTTCCCTTTTGTACCCAACTGAGTAGTATAAACCTTGCTAGGAACAAGCTCGGCGGTCAGATCCCCGAAAGCTTTAGGAATTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCGTCTGCGCTTAATGTCTTGCAACATTGTCAGAATTTGAGTACTGTGGTTCTTACCTTTAACTTCCATGGTGAAGTGTTGGGAGATGATCCTATCATGCATTTCAAGAGCCTCCAAGTTTTTATAATTGCTAATTGCGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAACAAGTTGCAGCTGTTGGATTTGTCATGGAACCATCTTGGAGGAAATATTCCATCCTGGTTCGGCGAGTTTCCGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCACTGGATATATCCCGAAACAGATGACTGAAATAAAGAGTTTCATTGATAGATACTTCTCACTTGATGACCCTTCCTCACCGGATTTTACTCTGTTTGTGAAAAAAAATGGAACTGGATTGCAGTACAATCAATTATCAAGATTTCCTCCCACTTTGAATCTCAGCCTCAACAATCTCAGTGGGCCAATCTGGCCAGAGTTTGGAAATCTTAAGGAGCTTCTAGTTCTTGATCTGAAAAACAACAACTTGTCGGGGTCAATTCCGAGCAGCTTCTCTGGGATGGTTAGCTTAGAGACTCTGGATCTTTCTCACAATAATCTTTCAGGAAAAATTCCACCATCACTGCAAATGCTCAGTTTTTTGTCCAAGTTCAGTGTTGCATACAATCATTTACATGGGGTGATTCTTAAAGGAGGCCAGTTTCATACATTTGGGAAGTCTAGCTTTGAAGGAAACAATTTCTGCGTTCAAGACGTATTATGTGCATCAATTGACCGAGATCCTCTAGTACCATCCCACAAATCAAGAATGGATATATGGACTGTTATATGTATGGTTATTGGTATTGTGTTCGGAATCGTGTTTCTTGCAGCTCTTGTGGTTGTGTTTATACTTCGGGCACCTCGAGGAAGAGTTGGAGATCCTGAACACGAAGTGTCTAACATTGACGATAATGACTTGGAGGAGGAAGTCAAGGAAGGATTGGTAGTTTTGTTTCAAAACAATGACAATGGAAGTCTCTCGCTCGAGGACATTTTGAAATCAACGAATGACTTCGATCAAGAAAATATCATCGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCAACCTTCCTGACGGTAGAAAGGTCGCTATAAAGCGGTTGTCTGGTGACTATGGTCAAATGGACAGAGAATTTCGAGCAGAAATCGAAACTCTTTCACGTGCACAGCATCCAAATCTTGTTCTTCTTCAGGGGTATTGTATGTATAAAGCTGAAAGGCTTTTGATTTTTTCTTATATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTTGACTGGGATACTAGACTTCAGATTGCTCGGGGGGGCGCCGAGGGTCTGGCCTATTTGCATCAATCCTGCGAACCCCGTATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTCATTCTTCCCAATGCTACCCACATAACAACCGATCTAGTTGGTACCTTGGGCTACATTCCACCCGAGTATGGACAATCCTCGGTTGCGACCTATAAAGGCGACGTGTACAGTTTTGGAGTTGTTCTGTTAGAGCTTTTAACCGGTAAAAGGCCAATTGATATGTGCAGGTCAAAAGGACTTCAAGATTTGGTCTCTTGGGTGTTCGAGATGAGGAATGACAGAAAAATAAGCGAGGTGTTCGATCCATTAATATACGACAAGAAGAACGGGATGGCAATGGCTGAAGTTCTTGATATAGCATGCCTTTGCTTGTGTAAAGTACCTAAAGAGAGGCCTTCAACACAACAGCTAGTTTCTAGGCTTAATACAGTAAGTTAA 3018 41.32 MAPQSFFSVLLPISFFLHLHFSSPNPTICHSNDSKALHDFHSTFSSQIDGLLTNCSTKCCTCIGITCDSSGRVVKMELDGMKLIGPLPNSIARLEHLRVLNLSSNSLTGFIPVALFQLPYLEVLDLSFNQFLGSISTGTINLPSLRVLNVSHNSFNGVLPLGVCVNSSRIEVLNLGFNNFIGMVPFQLAECVSLKRLHVESNFIRGGIPDEVSGLRKLTHLFVQNNKLSGFLNSVVGNLTSLVQLDLSSNEFFGEIPDVFYDSVNLSSFVAVSNRFSGKIPNSLSNSPSLTVLNLRNNSIGGTLDLNCSAMTSLVTLDLGTNRFHGSIPSNLPFCTQLSSINLARNKLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNVLQHCQNLSTVVLTFNFHGEVLGDDPIMHFKSLQVFIIANCGLKGMIPQWLRGSNKLQLLDLSWNHLGGNIPSWFGEFPFLFYLDLSNNSFTGYIPKQMTEIKSFIDRYFSLDDPSSPDFTLFVKKNGTGLQYNQLSRFPPTLNLSLNNLSGPIWPEFGNLKELLVLDLKNNNLSGSIPSSFSGMVSLETLDLSHNNLSGKIPPSLQMLSFLSKFSVAYNHLHGVILKGGQFHTFGKSSFEGNNFCVQDVLCASIDRDPLVPSHKSRMDIWTVICMVIGIVFGIVFLAALVVVFILRAPRGRVGDPEHEVSNIDDNDLEEEVKEGLVVLFQNNDNGSLSLEDILKSTNDFDQENIIGCGGFGLVYKANLPDGRKVAIKRLSGDYGQMDREFRAEIETLSRAQHPNLVLLQGYCMYKAERLLIFSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGGAEGLAYLHQSCEPRILHRDIKSSNILLDENFKAHLADFGLARLILPNATHITTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRSKGLQDLVSWVFEMRNDRKISEVFDPLIYDKKNGMAMAEVLDIACLCLCKVPKERPSTQQLVSRLNTVS 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5034444 5037461 + CmaCh04G009770.1 Cma04g00977 292058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00977 1005 PRINTS Leucine-rich repeat signature 544 557 - -
Cma04g00977 1005 PRINTS Leucine-rich repeat signature 565 578 - -
Cma04g00977 1005 SMART LRR_typ_2 239 262 IPR003591 -
Cma04g00977 1005 SMART LRR_typ_2 565 588 IPR003591 -
Cma04g00977 1005 SMART LRR_typ_2 142 166 IPR003591 -
Cma04g00977 1005 SMART LRR_typ_2 215 238 IPR003591 -
Cma04g00977 1005 SMART LRR_typ_2 311 335 IPR003591 -
Cma04g00977 1005 SMART LRR_typ_2 541 564 IPR003591 -
Cma04g00977 1005 SMART LRR_typ_2 94 118 IPR003591 -
Cma04g00977 1005 Pfam Protein kinase domain 731 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00977 1005 Pfam Leucine Rich Repeat 436 456 IPR001611 GO:0005515
Cma04g00977 1005 Gene3D Phosphorylase Kinase; domain 1 692 805 - -
Cma04g00977 1005 SMART serkin_6 730 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00977 1005 ProSiteProfiles Protein kinase domain profile. 730 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00977 1005 ProSitePatterns Protein kinases ATP-binding region signature. 736 758 IPR017441 GO:0005524
Cma04g00977 1005 SUPERFAMILY Protein kinase-like (PK-like) 716 1001 IPR011009 -
Cma04g00977 1005 Gene3D Ribonuclease Inhibitor 276 638 IPR032675 -
Cma04g00977 1005 ProSiteProfiles Leucine-rich repeat profile. 567 589 IPR001611 GO:0005515
Cma04g00977 1005 PANTHER OSJNBB0004A17.8 PROTEIN 98 161 - -
Cma04g00977 1005 PANTHER OSJNBB0004A17.8 PROTEIN 166 1004 - -
Cma04g00977 1005 PANTHER OSJNBB0004A17.8 PROTEIN 5 93 - -
Cma04g00977 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 852 864 IPR008271 GO:0004672|GO:0006468
Cma04g00977 1005 Gene3D Ribonuclease Inhibitor 163 275 IPR032675 -
Cma04g00977 1005 Gene3D Ribonuclease Inhibitor 29 162 IPR032675 -
Cma04g00977 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 166 1004 - -
Cma04g00977 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 5 93 - -
Cma04g00977 1005 PANTHER RECEPTOR-LIKE PROTEIN 55 98 161 - -
Cma04g00977 1005 Pfam Leucine rich repeat 522 578 IPR001611 GO:0005515
Cma04g00977 1005 Pfam Leucine rich repeat 193 251 IPR001611 GO:0005515
Cma04g00977 1005 Pfam Leucine rich repeat 90 131 IPR001611 GO:0005515
Cma04g00977 1005 Gene3D Transferase(Phosphotransferase) domain 1 806 1004 - -
Cma04g00977 1005 SUPERFAMILY L domain-like 511 626 - -
Cma04g00977 1005 SUPERFAMILY L domain-like 94 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00002 Cma-Chr4:7101 Cma04g00977 Cma-Chr4:5034444 0 dispersed
Cma04g00977 Cma-Chr4:5034444 Cma16g00404 Cma-Chr16:2006173 0 dispersed
Cma04g00977 Cma-Chr4:5034444 Cma16g00137 Cma-Chr16:601086 2.91E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68492 PF00069 Pkinase 3.20E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00977 - - bhj:120069286 1662.12