Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00985 ATGAAACTGATGGTAATCAGGTACTCTCCATTCTTCTTCGTCTTCTTGTTCTGTGTAGTGCCTCTGGTTCGGGCTGGAGATGAAGAAGCTCTGTTAGCACTGAAAGAATCTCTCGACCCTGGGAACTCGCTTCCATGGCGAGGAAGCTCTGTCTGCCACTGGCAAGGCGTGAAAGAGTGCAAAAATGGGCGGGTAACTAAGCTTGTTTTGGAGCATCTAAATCTCTCTGGCGTTCTTAACCACAAGATTTTGAATCGTTTAGATCAGCTTCGTGTTCTCAGTTTCAAAGGAAATTCACTCTCTGGCCAAATCCCTGATCTCTCAGGTCTTGTTAATCTCAAATCCCTCTATCTTAACGACAACAACTTTTCCGGCGAGTTCCCGATCTCCATCTCCGATCTCCATCGCTTGAAGGTCGTTGTTCTTTCCGGTAATCAAATATCTGGCCCCATTCCAGACTCGCTGCTCAAACTCCGGCGTCTCTATGTCCTACACCTGCAGGACAACCAACTCACCGGCTCCATCCCACCTTTCAACCAAACCAGTCTCCGATTCTTCAATGTCTCTAACAATCACCTCTCCGGCGACATCCCAGAAACCCCCGCCTTGCTCCGCTTCAATGTCTCGTCATTTTCCGGCAACCTAGAACTTTGCGGAAAACAAGTTCAAAACCCCTGTGGAAATATTGCCATTGCGCCATCATTAAGTCCCTCTTATTCACAAATCCTGAGCTCAAGCTCGTCTTCAAGACACAAAAAAATGGTCAGGATAATAGCAGGAAGCGTTGGTGGGTTTGTCGGGCTGCTATTAATCATTCTTTTATTGTGTATGATTTGCAAATGTAGGGAAAGAGAGAGCCTAGCGGAAGTTAGAAACAAAGGAATCGGCGACGAGGGGATGGGGATGGGGATGGGGATGGAGGAAACATCTGGAACTGCCGGCGGAAGCAGAGAAGTTAATAACGGGGGAAAGCAAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGGAGTCTAGTGTTCTGCGGAGCAGGGGATCAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGACCATCGGAAGCACATACAAGGCAGTGATGGAATCTGGGTATATTGTGACGGTGAAGCGGCTGAAGGATGCAAGGTACCCACGAGCAGAGGAATTCGGACGGCAGATGGAAGTGCTTGGGCGGCTCAGACACCCCAACTTGGTCCCTCTCAGGGCCTATTTCCAGGCTAAGGAGGAGCGCCTTCTCGTATACGATTATTTCCCCAATGGCAGTCTCTTCTCTCTCATCCACGGATCGAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTCAAAATAGCCGAAGACTTGGCCAGTGGTCTACTCTACATCCACCAGAACCCAGGCTCAATACATGGAAACCTCAAATCCTCAAACGTACTATTAGGATCGGATTTTGAGTCGTGTCTTACTGATTATGGTCTTAACTTATTCCGAGATCCTGATTCGCTCGAAGAAACTAGTGCAACTTCGCTCTTTTACCGAGCTCCCGAGTGCCGCGACATCCGTAAGCCAACCACACAACAAGCAGACGTCTATAGTTTTGGTGTTCTTCTGTTGGAGCTTCTTACAGGAAAAACACCCTTCCAAGATCTTGTTCAAGAACATGGCTCTGACATTCCCAAGTGGGTTAGCTCAGTTAGGGAAGAGGAGACGGAGTCTGGGGATGATCCCACGTCTGGGAACGAGGCATCGGAAGAGAAACTTCAAGCTCTTTTGAACATAGCAATGGCTTGTGTTTCACTTATGCCGCAGAACCGACCGACAATGAGGGATGTACTAAAGATGATAAGAGATACAAGAGCAGAGGCTCAAATATCATCCAACAGTAGTGATCATTCACCAGGGAGATGGTCTGATATTGTCCAGAGTTTGCCCAGGGAAGAACATTTAAGCATTTGA 1989 48.06 MKLMVIRYSPFFFVFLFCVVPLVRAGDEEALLALKESLDPGNSLPWRGSSVCHWQGVKECKNGRVTKLVLEHLNLSGVLNHKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLNDNNFSGEFPISISDLHRLKVVVLSGNQISGPIPDSLLKLRRLYVLHLQDNQLTGSIPPFNQTSLRFFNVSNNHLSGDIPETPALLRFNVSSFSGNLELCGKQVQNPCGNIAIAPSLSPSYSQILSSSSSSRHKKMVRIIAGSVGGFVGLLLIILLLCMICKCRERESLAEVRNKGIGDEGMGMGMGMEETSGTAGGSREVNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTIGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLASGLLYIHQNPGSIHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEETSATSLFYRAPECRDIRKPTTQQADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVSSVREEETESGDDPTSGNEASEEKLQALLNIAMACVSLMPQNRPTMRDVLKMIRDTRAEAQISSNSSDHSPGRWSDIVQSLPREEHLSI 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5060054 5064200 + CmaCh04G009850.1 Cma04g00985 292066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00985 662 Gene3D Ribonuclease Inhibitor 180 228 IPR032675 -
Cma04g00985 662 MobiDBLite consensus disorder prediction 633 662 - -
Cma04g00985 662 Gene3D Phosphorylase Kinase; domain 1 340 432 - -
Cma04g00985 662 MobiDBLite consensus disorder prediction 633 647 - -
Cma04g00985 662 Gene3D Transferase(Phosphotransferase) domain 1 433 648 - -
Cma04g00985 662 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 652 - -
Cma04g00985 662 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 652 - -
Cma04g00985 662 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Cma04g00985 662 MobiDBLite consensus disorder prediction 572 593 - -
Cma04g00985 662 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Cma04g00985 662 SUPERFAMILY Protein kinase-like (PK-like) 361 635 IPR011009 -
Cma04g00985 662 SUPERFAMILY L domain-like 34 215 - -
Cma04g00985 662 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00985 662 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Cma04g00985 662 Pfam Protein kinase domain 360 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00985 Cma18g01004 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00034 Cma-Chr4:196467 Cma04g00985 Cma-Chr4:5060054 0 dispersed
Cma04g00985 Cma-Chr4:5060054 Cma05g01321 Cma-Chr5:9993107 3.07E-125 dispersed
Cma04g00985 Cma-Chr4:5060054 Cma07g00691 Cma-Chr7:3037128 1.13E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68493 PF00069 Pkinase 1.40E-36 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00985 - - csv:101209119 1134.4