Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00986 ATGACGGACTCCAACCCACCACTCTTCCATCAATATGAGTTGCTTTTGCAATCCAAAGCTCAATTACAACTACTTAACAATGGCAATCAACAAATTAACTCTGTCATGGGGGAATGTCAGCTTCCTCTTATTGATCTTACAGGTTTGGAAAGTAGCAATGAAAAGGAGAGGAGGGCTTGCAGTAGAGAAATTTTTGGAGCGTCGACAGAATGGGGATTCTTCCAAGTGATAAACCATGGGATACGCACAGAGCTGCTGAGCAGAATGAGCAAAGAACAAATGAAGTTATTTGGGGTACCCTTTGAGAAAAAATCTACAAGTGGGATTTTGGATCATTCTTACAGATGGGGAACACCGACTGCAACCCACCCAAACCAGTTCTCTTGGTCTGAAGCTTTTCACATTCCCCTCACAAAGGTCTCTGAAGCTGCCTGCTATGGCGAGTTCATTAACTTAAGGGAAGTGATGGAGGAACTGGCAACCGCCATGTCGAAGTTAGCAAGATCTTTAGCAGGAGTTTTAGTGGAGTGTTTGGGCCACCGAAAAGAAATATTTGACGATATCTGCGACGAAAGCACATGCTTCCTCCGATTGAATCATTACCCAATCTGTCCATTTCCCGGCGATGTTTCCGGCCTGGTGCCCCACACGGACAGCGATTTCCTTACCATACTTCATCAAGATCGCAGCGGCGGGCTGCAGCTGATGAAAGGATCGCAATGGGTGGCTGTGAACCCCAATCCAGAAGCCCTTGTTGTCAACATTGGAGATCTTCTACAGGCTTGGAGCAATGATACGTACAAGAGTGTGAAGCACAGGGTCGTGGCTAATTCGATGCGGGAAAGATATTCGATAGCATACTTCCTCTGCCCTTCTTATCATTCTCCAATTGGGAGTTGCAGACAGCCTTCACCTTATAGACACTTCACTTTCGCGGAGTACAGAAAACAAGTTAGAGATGATGTGGAAAAAATTGGGTACAAAATAGGAAAATTTTACGACGGAATGGGGACGTTCATCAAACTTGAGGATTCTCCTATGTTCCTGAAACAGGTATTTTCTCTAGAACAACCAACTGATGAGTTGGAAGATCGATGCAGAAGACTACACGATGGATGTAGGATATTTATGGAAACTCTTGGAGAAGCTTGTAATGGAGACATTTCTTTTGCAGATTCTTTGGAAGGATTCGGTGTTGGACAGGATGATCCTGTCAGCGTGTCCATTGGAGGTCCAGTTATATCCAAATTTATCACTGCATTTCGTGAACTGGCTACCTACAAAGAACAACTGCGTTCCCAGGTAGAACATGTATTATCGGATCGGTTGATGCAGTTCCTGAACGAAGATTTACAAGGAGTAAGGGATTCTCGCCAATGCTTCGATAAAGCTATGCATGAGTACGATCAGGCTCGGGAAAAATTTGTGTCATTGAAAAAGAACACACGAGGGGACATTGTTGCAGAATTTGAAAAGGACCTCCTGAATTCAAAGTCAGCATTCGAGAAAAGCCGCTTCAATCTAGTGAATGCTCTCATGAACGTTGAAGCAAAGAAGAAGTATGAGTTCTTAGAATCTATAAGTGCACTGATGGATGCTCATTTGAGATATTTTAAGCTAGGCCATGACTTATTGGGCCAGATGGAACCTTTCATTCATCAGGTTCTAACATATACACAACAATCTAAAGAACTGGCCAACAATGAACAAGATAAACTTGCAAAAAGAATTCAGGAATTCAGGTCACAAGCACAGCTGGACAATTTGCAAGATTCCAATAGCCTAGATCTTTCCGTGATTTCTGATAGCATTCTTGGTAGTGGTACTAGTTCCTACAGAAATGTTGAAACAGCTTCCATGTTCATTGTCAATGGGCAGGTTGAAACCATAAAACAAGGATATCTCTTGAAACGATCTTCAGGTTCGAGGGGAGAATGGAAAAGGATGTTTTTCGTACTTGATAGTCAAGGTGCTCTCTATTATTATAAGAACAAGGGAAACAAATACATGGGCCATCAATCTCTTAGTTTCAATCGTTCAAATGAACACCACAAAAGTGTTTTTGATAGATTCCGTTCAAGGCACAAGAGGGCATCATCATTCAATGAAGAAATTTTGCGTTGCTCTACAGTTAATCTGCATACGTCTACAATAAAGAAGGATGCAGAGGATACAGACCTACGACTTTGCTTCAGAATAATTTCTCCCTCTAAGACCTACACTTTGCAGGCCGAAAACGAGGCAGATAGGATGGACTGGATCAATAAAATCACGGGGGCTATTGCATCTCTTTTCAATTCTTACTTTCTTCAACAGCCATTTCTGGAAGCAAAACATGATGAAAGTTATAACAACAATTTCGACGATTATAACGTACAGACTCTACATCAAAACAGACTAGAAGATGGCAGTCAAGTAGGTTCTGTTTCTAAGATATTAAGAGAAATTCCTGGAAATGATCTATGTGCAGAATGCGGCACTCCAGAGCCTAAGTGGGCCTCTCTAAACCTTGGCATTTTGTTGTGCATAGAATGCTCTGGTGTTCATCGTAATCTTGGTGTCCATATTTCGAAGGTAAGATCGATAGTATTAGATGTCAAAGTCTGGGATCCTATAATACTGGACTTGTTTAGGCACTTGGGCAATGCTTATTGTAACTCTATTTGGGAAGGATTGTTTCTTGCAGATACGGGAAGCGATAATATACAACACGACGTAGCCACGCCAATTCCAAAACCAAGTCTCAAGGATCCCATACAGCATCGGGAGAAATATGTTCATGCTAAGTATGTAGAGAAACTGTTTGTGGTCAAGGATAGTGAAGCACCCGGCAACAATTCTTATGCAAAAAGTATCTGGGAAGCTGTCAAAACAAATGACTTGCGAGAAGCTTATCGCCTCATAGCAGTTTCAGCAGTATCGATTGTCAACTCAACTTTTGATGATGTGGTCAGTGTCAGTTCGAGCCCGAATTTGGGTGAGGAGCCCTCGGGAAGTAATCAAGAATCTCATAATCCATCGTTGTGTGGAAGAGATTGGGATTCTAGAGAGTCAAAGAACAGTCTTCAAGGTTGCTCACTATTGCATCTCGCTTGTCAAAATGACAATCAAGTGATGCTTGAACTGTTATTGCAATTCGGTGCCAATATAAATGTATGCGACTCTAATGGAAGTACGCCTTTGCACCAATGCATCTCCCAGAAAAACAATACCTTGGCTAAGTTTCTACTTAGAAGAGGTGCACGACCATCCATCAAAGACGGTGGAGGATTAAGTGCGTTAGAGAGAGCAATGGAAATGGGAGCAATAGCCGATGAGGAGCTATTTCTTTTGCTTACAAGATCTGAATAA 3351 42.14 MTDSNPPLFHQYELLLQSKAQLQLLNNGNQQINSVMGECQLPLIDLTGLESSNEKERRACSREIFGASTEWGFFQVINHGIRTELLSRMSKEQMKLFGVPFEKKSTSGILDHSYRWGTPTATHPNQFSWSEAFHIPLTKVSEAACYGEFINLREVMEELATAMSKLARSLAGVLVECLGHRKEIFDDICDESTCFLRLNHYPICPFPGDVSGLVPHTDSDFLTILHQDRSGGLQLMKGSQWVAVNPNPEALVVNIGDLLQAWSNDTYKSVKHRVVANSMRERYSIAYFLCPSYHSPIGSCRQPSPYRHFTFAEYRKQVRDDVEKIGYKIGKFYDGMGTFIKLEDSPMFLKQVFSLEQPTDELEDRCRRLHDGCRIFMETLGEACNGDISFADSLEGFGVGQDDPVSVSIGGPVISKFITAFRELATYKEQLRSQVEHVLSDRLMQFLNEDLQGVRDSRQCFDKAMHEYDQAREKFVSLKKNTRGDIVAEFEKDLLNSKSAFEKSRFNLVNALMNVEAKKKYEFLESISALMDAHLRYFKLGHDLLGQMEPFIHQVLTYTQQSKELANNEQDKLAKRIQEFRSQAQLDNLQDSNSLDLSVISDSILGSGTSSYRNVETASMFIVNGQVETIKQGYLLKRSSGSRGEWKRMFFVLDSQGALYYYKNKGNKYMGHQSLSFNRSNEHHKSVFDRFRSRHKRASSFNEEILRCSTVNLHTSTIKKDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWINKITGAIASLFNSYFLQQPFLEAKHDESYNNNFDDYNVQTLHQNRLEDGSQVGSVSKILREIPGNDLCAECGTPEPKWASLNLGILLCIECSGVHRNLGVHISKVRSIVLDVKVWDPIILDLFRHLGNAYCNSIWEGLFLADTGSDNIQHDVATPIPKPSLKDPIQHREKYVHAKYVEKLFVVKDSEAPGNNSYAKSIWEAVKTNDLREAYRLIAVSAVSIVNSTFDDVVSVSSSPNLGEEPSGSNQESHNPSLCGRDWDSRESKNSLQGCSLLHLACQNDNQVMLELLLQFGANINVCDSNGSTPLHQCISQKNNTLAKFLLRRGARPSIKDGGGLSALERAMEMGAIADEELFLLLTRSE 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5067266 5093612 + CmaCh04G009860.1 Cma04g00986 292067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00986 1116 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 135 IPR026992 -
Cma04g00986 1116 SUPERFAMILY Clavaminate synthase-like 34 318 - -
Cma04g00986 1116 ProSiteProfiles PH domain profile. 628 762 IPR001849 -
Cma04g00986 1116 Pfam PH domain 630 761 IPR001849 -
Cma04g00986 1116 Gene3D Arfaptin homology (AH) domain/BAR domain 341 586 IPR027267 -
Cma04g00986 1116 CDD BAR_SFC_plant 350 551 IPR035670 -
Cma04g00986 1116 CDD ArfGap 811 930 - -
Cma04g00986 1116 Gene3D - 1002 1113 IPR036770 -
Cma04g00986 1116 ProSiteProfiles Ankyrin repeat region circular profile. 1056 1087 - -
Cma04g00986 1116 MobiDBLite consensus disorder prediction 987 1008 - -
Cma04g00986 1116 MobiDBLite consensus disorder prediction 987 1013 - -
Cma04g00986 1116 SMART PH_update 629 764 IPR001849 -
Cma04g00986 1116 SUPERFAMILY PH domain-like 628 776 - -
Cma04g00986 1116 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 190 291 IPR005123 -
Cma04g00986 1116 ProSiteProfiles ARF GTPase-activating proteins domain profile. 807 943 IPR001164 GO:0005096
Cma04g00986 1116 SUPERFAMILY BAR/IMD domain-like 342 651 IPR027267 -
Cma04g00986 1116 Pfam BAR domain of APPL family 342 567 - -
Cma04g00986 1116 PRINTS HIV Rev interacting protein signature 819 838 IPR001164 GO:0005096
Cma04g00986 1116 PRINTS HIV Rev interacting protein signature 838 855 IPR001164 GO:0005096
Cma04g00986 1116 Pfam Ankyrin repeats (3 copies) 1014 1087 IPR002110 GO:0005515
Cma04g00986 1116 Gene3D - 16 323 IPR027443 -
Cma04g00986 1116 PANTHER CENTAURIN/ARF 336 1112 IPR045258 GO:0005096
Cma04g00986 1116 ProSiteProfiles Ankyrin repeat profile. 1056 1088 IPR002110 GO:0005515
Cma04g00986 1116 SMART arf_gap_3 807 943 IPR001164 GO:0005096
Cma04g00986 1116 Pfam Putative GTPase activating protein for Arf 810 937 IPR001164 GO:0005096
Cma04g00986 1116 ProSiteProfiles Ankyrin repeat region circular profile. 1023 1054 - -
Cma04g00986 1116 Coils Coil 461 481 - -
Cma04g00986 1116 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 336 1112 - -
Cma04g00986 1116 SUPERFAMILY ArfGap/RecO-like zinc finger 810 937 IPR037278 -
Cma04g00986 1116 SUPERFAMILY Ankyrin repeat 1022 1103 IPR036770 -
Cma04g00986 1116 Pfam 2OG-Fe(II) oxygenase superfamily 195 291 IPR044861 -
Cma04g00986 1116 SMART ANK_2a 1056 1085 IPR002110 GO:0005515
Cma04g00986 1116 SMART ANK_2a 1023 1052 IPR002110 GO:0005515
Cma04g00986 1116 Gene3D - 622 771 IPR011993 -
Cma04g00986 1116 Coils Coil 563 583 - -
Cma04g00986 1116 Gene3D Arf GTPase activating protein 787 945 IPR038508 -
Cma04g00986 1116 SMART 5bar 341 554 IPR004148 GO:0005515|GO:0005737
Cma04g00986 1116 CDD PH_ACAP 631 766 - -
Cma04g00986 1116 ProSiteProfiles Ankyrin repeat profile. 1023 1055 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00986 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - csv:101221303 1293.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00032 Cma-Chr4:164821 Cma04g00986 Cma-Chr4:5067266 0 dispersed
Cma04g00033 Cma-Chr4:191407 Cma04g00986 Cma-Chr4:5067266 0 dispersed
Cma04g00986 Cma-Chr4:5067266 Cma14g01398 Cma-Chr14:10787753 0 dispersed
Cma04g00986 Cma-Chr4:5067266 Cma06g01713 Cma-Chr6:10518609 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1070 . . . . . . . . Cmo04g01062 . Cma04g00986 . Car04g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01194 . .
Vvi19g449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00986 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003009 1 11 0 0 1 2 2 2 3 0 1 1 2 1 1 2 2 2 3 3 1 1 1 2 2 1 0 2 0 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00986 Cma_Chr04 FPKM 1.335422 1.977791 1.259535 1.454579 2.892965 3.258933 3.244622 1.486959 1.588162 1.582325