Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00989 ATGGCTATGCCATCGGGAAATGTGGGCGTACCGGATAAAGTATCGTTTCAGAGTGGTGGTGGCGGTGGAGTTGCGGTGAGTGGTGGCGGTGGCGAGATCCATCAACACCACCCCCGCCCCTGGTTTCCTGATGAGCGTGATGGGTTTATCTCATGGTTGCGAAGTGAATTTGCTGCTGCGAATGCAATGATTGATGCCCTTTGCCATCACTTGCGTGCTGTGGGAGAGCCTGGGGAGTATGATGTGGTTATTGGGTGTATACAGCAGCGGCGGTGTAATTGGACGCCCGTGATTCATATGCAACAGTACTTTTCAGTGGCAGACGTGAGCTATTCCCTTCAGCAGGTCATTTCAAGGAGGCAACAGAGGTATATCGATCCCGTAAAAGTGGGGCCGAAGTTCTATAGGAGACCTGGGCCAGGGTTTAAGCAGCAGCAGCAGCAGCAGCAGGGCCATAGGATTGAAGCCACAGTCAAGGAAGAGATGGTCACTTGTGCAGAGTCATGTAATGGTGGGAATTCTTCAAGTTTTGTAGGCTCTAGGAAGGTGGAGCAAGTAAGTAATACGTGCGAGGAAAGTAAAGCATCGGGGGAGGACGAAAATTTGAACGACAAAGATTCAGGGTCAGCTGAGGACAGAAAAGATACTCATGGGAAGGACCAAGGTAATAGCAAACCGAAGTGTGCAGAACATTTAGAAGATAATGCAAGTAATAAAGAATCTCATGTTGAACCTACTGACGATGGATGTTCTTCAAGTAATAGAAATAAGGAGTTGCAATCTGTTCAAAGCCAGAATGGAAAGCAGTATGCTGCGACAACCCCGAGAACCTTTGTTGCCAATGAGATGCTTGATGGAAAGATGGTTAATGTGATGGATGGATTGAAATTGTTCGAAGATTTTTTGGACGATGCTGAGGTTTCAAAGCTTCTTTCATTGGTGAACGATTTGAGAGCTTCTGGAAAGAGGGGGCAATTTCAAGGTTCGACATATGTGGTCTCAAAAAGACCCATGAAGGGACATGGGAGAGAGATGATCCAACTAGGCTTTCCCATTGCAGATCATCCTCATGATGATGACAACTCTTCAGGGCTCTCAAAAGATCGAAGAATAGAATCCATCCCGTCGTTGCTTCAAGATCTCATCGATCGCTTGGTTGGAGAGCAAATGATGTCAGTGAAACCAGATTCCTGCATCATTGACTTTTATAACGAGGGTGATCATTCTCAGCCTCATGTCTGGCCACCATGGTTTGGGCGGCCCGTTGGTGTCCTCCTTTTGACTGAATGTGAAATGACCTTTGGTAGAGTAATTGGTACAGACCATTCTGGCAACTATAAAGGGGCTATGAAGCTGTCTCTTGCACCCGGAACCCTTCTTGTTGTGGAAGGAAAATCTGCAGATTTTGCTAAGCATGCAATTCCCGCCATCCGCAAGCAACGTATACTTGTTACCTTGACCAAATCACAACCAAAAAGAGCTGTACCCTCTGATGGGCAACGCACATCTTTGAATGTAGGTCCATTTGCCAGTTGGGGTCCTCCATCTGTTAGATCGCCGAACCCTCGCCTTTCCCCTGGACAGAAGCACTACGCTTCAGTTCCATCAACAGGGGTTCTACCAGCGCCACCCATTCGTCCCCAAATGCCGCCACCAAATGGCATCCCACCCCTAATTGTCTCTCCCGTAGCATCACCTATGCCGTTCCCTCCTCCTGTGCCGATCCCAACTGGTCCACCCACATGGCCTACTGCACATCCAAGGCATCCTCCACCGCGCCTCCCTGTTCCAGGTACTGGAGTATTCCTTCCCCCTCCAGGTTCTTCTAGTGCTCCATCTCCAGCTCCTCAACAGTTGCCAAACTCCACTGTTGAGACGGGTTCCCTTTCAGAAAAGGAGAACGGTTCGACAAAATCTGATCATAATGCAGGTGCTTCTCAAGGAGAAAAATCAGAAGCAAAGCCTCAAAGACAAGAATGCAATGGAAGTGAGAGTGAAAAAGTGAGGGAGGAAGAGCAGCAGGAGCAGCAAGAACAAAGTGAGAATCTGCAGGCCCAACATGCAGGAGATGGAGCAGTTTAG 2082 48.51 MAMPSGNVGVPDKVSFQSGGGGGVAVSGGGGEIHQHHPRPWFPDERDGFISWLRSEFAAANAMIDALCHHLRAVGEPGEYDVVIGCIQQRRCNWTPVIHMQQYFSVADVSYSLQQVISRRQQRYIDPVKVGPKFYRRPGPGFKQQQQQQQGHRIEATVKEEMVTCAESCNGGNSSSFVGSRKVEQVSNTCEESKASGEDENLNDKDSGSAEDRKDTHGKDQGNSKPKCAEHLEDNASNKESHVEPTDDGCSSSNRNKELQSVQSQNGKQYAATTPRTFVANEMLDGKMVNVMDGLKLFEDFLDDAEVSKLLSLVNDLRASGKRGQFQGSTYVVSKRPMKGHGREMIQLGFPIADHPHDDDNSSGLSKDRRIESIPSLLQDLIDRLVGEQMMSVKPDSCIIDFYNEGDHSQPHVWPPWFGRPVGVLLLTECEMTFGRVIGTDHSGNYKGAMKLSLAPGTLLVVEGKSADFAKHAIPAIRKQRILVTLTKSQPKRAVPSDGQRTSLNVGPFASWGPPSVRSPNPRLSPGQKHYASVPSTGVLPAPPIRPQMPPPNGIPPLIVSPVASPMPFPPPVPIPTGPPTWPTAHPRHPPPRLPVPGTGVFLPPPGSSSAPSPAPQQLPNSTVETGSLSEKENGSTKSDHNAGASQGEKSEAKPQRQECNGSESEKVREEEQQEQQEQSENLQAQHAGDGAV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5095834 5101543 + CmaCh04G009890.1 Cma04g00989 292070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00989 693 SUPERFAMILY Clavaminate synthase-like 287 486 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 540 557 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 193 246 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 492 509 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 578 613 - -
Cma04g00989 693 Gene3D - 278 495 IPR037151 -
Cma04g00989 693 MobiDBLite consensus disorder prediction 652 676 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 247 269 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 614 651 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 188 269 - -
Cma04g00989 693 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 1 676 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cma04g00989 693 MobiDBLite consensus disorder prediction 492 557 - -
Cma04g00989 693 Coils Coil 666 688 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 578 693 - -
Cma04g00989 693 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 676 - -
Cma04g00989 693 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00989 - - - cpep:111785549 1211.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00989 Cma18g01074 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00691 Cma-Chr3:5697859 Cma04g00989 Cma-Chr4:5095834 1.33E-25 dispersed
Cma04g00989 Cma-Chr4:5095834 Cma17g01156 Cma-Chr17:8027513 2.66E-50 dispersed
Cma04g00036 Cma-Chr4:202968 Cma04g00989 Cma-Chr4:5095834 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005898 1 2 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00989 Cma_Chr04 FPKM 38.405323 40.314499 35.908119 35.283215 50.442261 48.775398 52.669731 36.154278 35.021935 33.318439