Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00992 ATGGAGTCTCTTCCTTCCGGTTACCGCCCCAACATTGGCGTTTGTCTCATCAACTCTGATAGTCAGGTTTTTGTGGCGTCTAGACTGAATGTTCCAGGAGCGTGGCAGATGCCTCAGGGAGGTATTGAGGATGGTGAAGACCTCAAACTGGCAGCTGTTAGGGAACTGAAAAAGGAAACTGGAGTAGTGTCTGCTGAGATCGTCGCCGAGGTACCCAAATGGTTGACTTACGACTTTCCTTCTGCTGTTAAGACGAAAGTCAATCGTCTCTGGGGCGGACAATGGCATGGACAGGCTCAAAAATGGTTTCTTATGAGAATGACGAAAGACGACAGCGAGATTAACTTGGACAACGATGAAGCCGACGTAGAATTTGCAGAGTGGAAATGGGCAAGCCCCGAAGAGGCTGTGGACTACAAGAGACCAACATATGAGGAAGTAATGAAGACTTTTGCAGCATACCTCGATGGAAACAAGATATCTACCAAATGTCTCTCCAGAGGAATAATCAATCACACACACGCCTCCGTGGACCCTCACAAGAATATGGTTGAGAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTCAAGAACTTATAGGTAGAGGGAGCTATGGAGTTGTTGCATCTGCCATAGACACTCATTCTGGTGAGAAAGTTGCTATCAAGAAGATAAATAATGTCTTCGAGCATGTTTCTGATGCCACACGTATTCTAAGAGAAATAAAGCTGCTCCGATTTCTCCGACATCCCGATATCGTTGATATCAAACATATATTGCTCCCTCCATGTAGAAGGGAGTTTAAAGATTTGTACATTGTTTTTGAATTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGATGATCTCACCCCTCAGCATCATCAGTTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCGCATGTGTTCCATAGAGATTTGAAGCCGAAGAATATACTTGCTAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGACTTGCGCGTGCATCTTTTAGTGATGCCCCGTCTGCCATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTCTCTCAAAGATTCGTAACGAAAAGTCTAAAAGGTATTTGAGTGGCATGAGAAAAAAACATCCAATTCCTCTGTCAAGAAAGTTCCCCAATGCAGATCCACTAGCTCTTCGTTTACTCGAACGTCTGCTCGCATTTGATCCCGATGATCGTCCTTCTGCAGAGGAGGCATTAGCTGATCCATACTTCCATGGACTGGCAAATCTGGAGGATGAACCATCCAGGCAACCCATTTCAAAACTCGAGTTCGAGTTTGAAAGGGGAAAGTTGACACAAGATGATATTTTAGAGTATCACCCTCAAATGTTACAGGGCTACCTTCAAGGTTCTGGGAGTCACTTCTTGTATCCCAGTGGAATTGATCGATTCAAGCGTCAATTTGATAATCTTGAGGAACGTTCTGGTAGAGTTGAGAGAGGCACAGGCAGTCCACTTCTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATACACCACGAGATGAAGACGATGATGAAAAATGTATATCGGAACGGAGAACTGCAGCGCTTCGAAGCCCTCCTGGACCTGCTTGTTCATTAACTGCTCAGAATGGTTCTGTTCATGTAGATTGCAATAGCTATAACCTGTTGAGGAATGCAAGTATAAGTTGTTCTAAATGGGTGGATTAA 1782 43.66 MESLPSGYRPNIGVCLINSDSQVFVASRLNVPGAWQMPQGGIEDGEDLKLAAVRELKKETGVVSAEIVAEVPKWLTYDFPSAVKTKVNRLWGGQWHGQAQKWFLMRMTKDDSEINLDNDEADVEFAEWKWASPEEAVDYKRPTYEEVMKTFAAYLDGNKISTKCLSRGIINHTHASVDPHKNMVEKEFFTEYGEATQYEIQELIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHILLPPCRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFLSKIRNEKSKRYLSGMRKKHPIPLSRKFPNADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLANLEDEPSRQPISKLEFEFERGKLTQDDILEYHPQMLQGYLQGSGSHFLYPSGIDRFKRQFDNLEERSGRVERGTGSPLLRKHASLPRERIYTPRDEDDDEKCISERRTAALRSPPGPACSLTAQNGSVHVDCNSYNLLRNASISCSKWVD 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5119035 5126633 + CmaCh04G009920.1 Cma04g00992 292073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00992 593 ProSitePatterns MAP kinase signature. 233 336 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma04g00992 593 ProSitePatterns Protein kinases ATP-binding region signature. 204 228 IPR017441 GO:0005524
Cma04g00992 593 SMART serkin_6 198 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00992 593 Pfam Protein kinase domain 198 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00992 593 Gene3D Transferase(Phosphotransferase) domain 1 378 462 - -
Cma04g00992 593 Gene3D Phosphorylase Kinase; domain 1 197 281 - -
Cma04g00992 593 ProSiteProfiles Nudix hydrolase domain profile. 7 155 IPR000086 -
Cma04g00992 593 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 162 379 - -
Cma04g00992 593 Gene3D Transferase(Phosphotransferase) domain 1 282 376 - -
Cma04g00992 593 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 162 379 - -
Cma04g00992 593 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 379 565 - -
Cma04g00992 593 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 155 - -
Cma04g00992 593 ProSiteProfiles Protein kinase domain profile. 198 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00992 593 CDD Ap4A_hydrolase_plant_like 7 151 IPR022927 -
Cma04g00992 593 SUPERFAMILY Nudix 8 153 IPR015797 -
Cma04g00992 593 Pfam NUDIX domain 8 147 IPR000086 -
Cma04g00992 593 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 379 565 - -
Cma04g00992 593 SUPERFAMILY Protein kinase-like (PK-like) 195 444 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00992 Cma-Chr4:5119035 Cma11g00304 Cma-Chr11:1510304 0 dispersed
Cma14g00354 Cma-Chr14:1562470 Cma04g00992 Cma-Chr4:5119035 8.73E-52 dispersed
Cma18g00956 Cma-Chr18:8145039 Cma04g00992 Cma-Chr4:5119035 5.95E-61 dispersed
Cma19g00847 Cma-Chr19:7995516 Cma04g00992 Cma-Chr4:5119035 1.48E-07 dispersed
Cma04g00042 Cma-Chr4:221872 Cma04g00992 Cma-Chr4:5119035 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68494 PF00069 Pkinase 2.40E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00992 - - csv:101204645 681.404