Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00997 ATGGCCGGGATTTTCGCCGGCGGCAGTGACTGTCCACCGGCTTCGGCTTTACTGGATTTTGTTCGCGATGTCGTTCGAATGTCGGCGGGGACGGGCAGTGGAGGGGTTTTCAAGAGGGATTGTACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTTAATGGCGTCAAATTTCGACATGTTGGTGCATCTTCTTCTTCTTGTGGCGCTGTTACCGTGAGGGATTCGTCTCCGTCTTCGTGGCTATGTGATTTAGTGGCGGCGTTGAAGGATACTGAGCGCCTCATTTTTGCCGCTTCGACTTTCCGGTCCTGCGGTTCTTCTTCTGAAGAAGTTGCCAATAAGATCATCTTTCAATTCCAATGCGTGACATGGAAGTTAGAGAAGGCATTGAGCAATCTTCCTTATGATCGCCTTGATATATCAGAGGAAGTCCAAGAACAGGTTGAATTAGTGAGAGCTCAGTTGGGAAGAGCAGCTGAAAAATATGGGTCTCTGACTGCAATTCCGCCATCAGTTGTTCAATCTCAGTTGCTGAAGAAAAATGTGGACCTGTTAAACCTGAACAACTGTGTTGATAACTTTCATGTTGAGGAGAATGGTATAGTTGATCATGAGATTACAGTGAAATTTGATGCCTTTCCAAATTGTAGAGGTTTGATGAATAGGGGTGAGGATCAGCTTGAGAAACTTCCATCCTCCTCAGAGGGTTGTTCTGATGGACAGAATGACTCTGCCAAAAAGAGTGGAGACCAGGTGAAGAACCCAGACGCGGTTCCAATCCCTGATGATTTTTTATGCCCCATATCCCTGGAAATCATGAGGGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGAATCTCACCCCAAATTATGTGCTGCGAAGTCTTATTAGTCAATGGTGTGTTAACCACAATATTGAGCAACCTACAGGACTAACCAATGGGAAGATCAAAAAGTGTGATGGATCGTACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGGAAACTAACTAGCCATTCAATCGAGGAGCAGAGAGCATCTGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACGGATAACAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCTTTGGTCAATCTATTAACGGTTGATGATGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTGAACCTTTCAATATATGAGAACAACAAGGGACTCATTATGCTTGCTGGTGCCATACCTTCCATTGTCCAAGTTCTGAGAGTTGGAAGTATGGAAGCGAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGATTCTGGGGCCATTCCGGCTCTTGTGAATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGTAACAAGGGAAGGTCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCGGTTAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCGATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTGCTGAGGACCGGATTGCCTCGCAACAAAGAAAACGCTGCTGCAATTTTGCTTGCTTTGTGTAAGAGAGATACAGAAAATCTTTCCTGCATGAGTAGGCTGGGTGCCGTGATTCCACTGACCGAGCTCGCCAAGAGTGGCACCGAGCGAGCAAAGAGGAAAGCTATTTCTCTGTTGGAGCATCTTCGAACGCTGCAGCAGCAGCTATAG 1950 45.54 MAGIFAGGSDCPPASALLDFVRDVVRMSAGTGSGGVFKRDCTDLVRRIVLLTHLFEEIRDFNGVKFRHVGASSSSCGAVTVRDSSPSSWLCDLVAALKDTERLIFAASTFRSCGSSSEEVANKIIFQFQCVTWKLEKALSNLPYDRLDISEEVQEQVELVRAQLGRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNCVDNFHVEENGIVDHEITVKFDAFPNCRGLMNRGEDQLEKLPSSSEGCSDGQNDSAKKSGDQVKNPDAVPIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLNLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEEQRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTVDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGDSGAIPALVNLLENGSSRGKKDAATALFNLCIYQGNKGRSVRAGIIPALLKMLTDSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLSCMSRLGAVIPLTELAKSGTERAKRKAISLLEHLRTLQQQL 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5158776 5161962 + CmaCh04G009970.1 Cma04g00997 292078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00997 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 342 IPR013083 -
Cma04g00997 649 Coils Coil 150 170 - -
Cma04g00997 649 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Cma04g00997 649 SUPERFAMILY RING/U-box 264 342 - -
Cma04g00997 649 SMART arm_5 604 644 IPR000225 GO:0005515
Cma04g00997 649 SMART arm_5 398 438 IPR000225 GO:0005515
Cma04g00997 649 SMART arm_5 439 479 IPR000225 GO:0005515
Cma04g00997 649 SMART arm_5 521 561 IPR000225 GO:0005515
Cma04g00997 649 SMART arm_5 480 520 IPR000225 GO:0005515
Cma04g00997 649 SMART arm_5 562 602 IPR000225 GO:0005515
Cma04g00997 649 MobiDBLite consensus disorder prediction 236 266 - -
Cma04g00997 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 492 IPR000225 GO:0005515
Cma04g00997 649 MobiDBLite consensus disorder prediction 240 257 - -
Cma04g00997 649 Gene3D - 549 649 IPR011989 -
Cma04g00997 649 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Cma04g00997 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 491 518 IPR000225 GO:0005515
Cma04g00997 649 SUPERFAMILY ARM repeat 359 642 IPR016024 -
Cma04g00997 649 PANTHER U BOX DOMAIN-CONTAINING 20 644 - -
Cma04g00997 649 Gene3D - 444 548 IPR011989 -
Cma04g00997 649 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Cma04g00997 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Cma04g00997 649 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 20 644 - -
Cma04g00997 649 CDD RING-Ubox_PUB 273 315 IPR045210 -
Cma04g00997 649 Pfam Armadillo/beta-catenin-like repeat 481 519 IPR000225 GO:0005515
Cma04g00997 649 Pfam Armadillo/beta-catenin-like repeat 399 437 IPR000225 GO:0005515
Cma04g00997 649 Gene3D - 343 443 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00997 Cma15g00946 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00997 Cma-Chr4:5158776 Cma13g00132 Cma-Chr13:899216 5.49E-165 dispersed
Cma09g00992 Cma-Chr9:5072496 Cma04g00997 Cma-Chr4:5158776 2.14E-06 dispersed
Cma12g00122 Cma-Chr12:504980 Cma04g00997 Cma-Chr4:5158776 8.51E-30 dispersed
Cma15g00946 Cma-Chr15:5061115 Cma04g00997 Cma-Chr4:5158776 0 transposed
Cma04g00054 Cma-Chr4:262719 Cma04g00997 Cma-Chr4:5158776 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00997 - - csv:101221534 1100.89