Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01004 ATGGCTGGAGATATCGAACAGCCGTTTACCTTTAATTTTCAGGTTGAATCTGTAATCTCGGACTCTATATCATTTGGAAGGTTTGAAAAAGAATCCTTATCTTGGGAAAGGAGGTCATCATTCTCTCATAATCGTTACCTAGAAGAGGTAGAGAAATTCTCCAAACCGGGTTCTGTCAATGAGAAAAAGGCTTACTTTGAGGCTCATTTCAAGAAAAAGGGAGGGTTGCTTGGTCAGAATTCAGCAGAGTCCCATACTCTTGACAGTGATGTATCAGAGCAAGTGAATCAAGAGGCAGACATTGAGATTATAAACATGGAGAATCATGATGGTCATTTTGATGATAGCTCTGTCAGTTCACAAAACCATTGGGACCATGTGGTGATGGAATTTGAAGAAATGCCAAGACAGGGAATTTCATCTCCTAATCCTAAATGTGAAAATTCTTTCAGCGGTGTTGATGGTTCAACATATGGTGATTGTAACGGCGTTCATGCTGAAATAAATGAGCAAGATGACAGTGGGGAGAACACGTTCTCAACTGTTGTAAGTGGTGAACCAGAGGTTGAAATAAAGGAAGATGCCAACAGTCTTGGAATGAGCGAGAATACGCCGTCTGAAGCCATGGAGGCAGTCCCCAAAACTGAGCTAGTGAAGAAAGGTGCCAAAAGCTGCTCAGGAAGTCAGCGAACTCTCACTCCGAAGATGATAACTAGAAGGGAAACAAAGGCCTCCTCCAGATCTCAGGCCAACATTTGTCAGAGTCGAAGAAATGTTTCGGGTGATGTTCTCAAATCTCCTGAAAAGGCATCCAGTAAAAGCAAAGGAGAGCCTTCACATACAACTTGCACAGAAGCTCATCCATCAAAATCTGCCATTTCACGTACAAAAGATGTCCGTAGAACCCCCAAAGTTGAGGATTCTAAAGTTATCAAGGGAAGAACTATTCTTGAGAGTAGAAGATGTAATGAGGTACAAACTTCTGGAGTATCACATTCTTCTCCATTGAAGGTTGAGTCTAGATCATATTTAAGGACAACCACCAGGCAAAATCGGACTGTCAACTCAGTCATGCAAGACACTGGGAAAAGCGCTTCAGCTTCCAATTTTAGAAGCAAAGACTTCGCAGAAAGGAGAAAACAGGGTAAGGCAGACTCTGAAATTAAGAAATTACAGAAGAACCTTGACATCAGATCAAAACCAATACCCTCTTCTTACGGTGCAATTCGACCTGAGTCAGATGGGAAGAAGGCTGTGTTTAGTGGCACGAAAGTAAGAAACACTTTGAGAAAGTCCACAGCTGCGGCGTCCTCCTCGCATTCACAGTTAGGAAAAGACATCGATTCCTCTGCAAGTGAAGCACCAAATAATACTTCAAAGAACAGGAACTGCCATGTAGCCATGCATGATGAAGCAAGCGTTAATTCTTCAAGTCCATCAGCTAACCAAGAGTTAAGGAAAGACCAAGCAAAGGGGAAAGAACCCAATGTGCAGAAATCCATAGTTTCAGAGAATTATAAGACGATGTCCAAACAAGGAATTGAGGGGAGGCAGAAAGTCAGGGTGCGGAGAAGCATGAATTTGATGGGGAGACCAAGGGACACTAAAGCTGTTTCTGGCTCCGGAATGGGACGATTTGCTGTTGGTGTTACATCGTGA 1659 42.86 MAGDIEQPFTFNFQVESVISDSISFGRFEKESLSWERRSSFSHNRYLEEVEKFSKPGSVNEKKAYFEAHFKKKGGLLGQNSAESHTLDSDVSEQVNQEADIEIINMENHDGHFDDSSVSSQNHWDHVVMEFEEMPRQGISSPNPKCENSFSGVDGSTYGDCNGVHAEINEQDDSGENTFSTVVSGEPEVEIKEDANSLGMSENTPSEAMEAVPKTELVKKGAKSCSGSQRTLTPKMITRRETKASSRSQANICQSRRNVSGDVLKSPEKASSKSKGEPSHTTCTEAHPSKSAISRTKDVRRTPKVEDSKVIKGRTILESRRCNEVQTSGVSHSSPLKVESRSYLRTTTRQNRTVNSVMQDTGKSASASNFRSKDFAERRKQGKADSEIKKLQKNLDIRSKPIPSSYGAIRPESDGKKAVFSGTKVRNTLRKSTAAASSSHSQLGKDIDSSASEAPNNTSKNRNCHVAMHDEASVNSSSPSANQELRKDQAKGKEPNVQKSIVSENYKTMSKQGIEGRQKVRVRRSMNLMGRPRDTKAVSGSGMGRFAVGVTS 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5197950 5202541 - CmaCh04G010040.1 Cma04g01004 292085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01004 552 MobiDBLite consensus disorder prediction 217 307 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 514 530 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 243 267 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 353 371 - -
Cma04g01004 552 PANTHER PROTEIN WVD2-LIKE 7 22 552 - -
Cma04g01004 552 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 22 552 IPR044216 -
Cma04g01004 552 MobiDBLite consensus disorder prediction 425 463 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 276 290 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 470 485 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 496 512 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 291 307 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 372 396 - -
Cma04g01004 552 MobiDBLite consensus disorder prediction 353 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01004 - - - csv:101208552 733.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01004 Cma-Chr4:5197950 Cma15g00377 Cma-Chr15:1713948 8.33E-20 dispersed
Cma04g00061 Cma-Chr4:287796 Cma04g01004 Cma-Chr4:5197950 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g418 . . . . . . . . Cmo04g01083 . Cma04g01004 . Car04g00941 Car04g00058 . . . . . . . . . . Cla07g00588 Cam07g0614 Cec07g0681 Cco07g0662 Clacu07g0623 Cmu07g0648 Cre07g0994 Cone13ag0767 Cone19ag0770 . . Lsi04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01034 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01004 Cma_Chr04 FPKM 15.980967 18.791519 33.23494 31.485924 24.914747 23.953766 23.22126 8.199338 7.318065 8.654899