Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01012 ATGGTCGTCGATTGGGTCAATTCGTGTACGTGTTTTTGCCTTCGATCTTTGTTTTATATTTCTCAAATCAAAGATCAAATTTCGATTCCCCATTTCTCTGTCTCGATTCCCCAATCCCATCCGCACCACCAACAACAGCAGCAACAGCAGCAGCAGCAGCCATTTTTTGATCCTACGAGCATGACGAAGTCCAAGAGTATGTTACACAACCTCATGAGACCATTCAGATTCGGTTCATCAAGAGATAGTCAGGGCGAAGACGATTTGGAGCAGATTGCAGCTAATGAAAAGAAGTTTTTTCGGTTCGAAACCTTAGTTGAAGCTACCAACAATTTCCACCCCACGAACAAGCTTGGCCAAGGCGGATTTGGTCCAGTTTTCAAGGGGAAGTTGAAGGATGGAAGAGTGATTGCAGTTAAGAAGTTGTCGCAATATTCAAAACAAGGAAAAAAGGAGTTTATGACTGAGGCCAAATTGTTGGCTCGTGTGCAGCACAGAAATGTTGTCAATTTGTTGGGATACTGTGTGCATGGTTCAGAAAAATTACTGGTTTACGAATACGTCACGAATGAGAGCCTCGACAAGCTTCTCTTTAAAGCCAGCAGACGAGGAGAACTTGATTGGAAGATGAGGTATGGCATAATCTGTGGCGTAGCACGAGGGTTGCAATATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGACATTAAGGCTGGTAACGTTTTGTTGGATGATAAATGGGTCCCTAAGATTGCGGATTTTGGTATGGCTCGTCTCTTCCCGGAAGATCAAACTCATGTCAATACTCGTGTTTCTGGTACAAATGGGTATATGGCTCCCGAATATGTAATGCACGGGCATCTATCTGCGAAGGCAGATGTATTTAGCTTTGGTGTTTTAGTGTTGGAGCTTATCAGTGGCCAGCGAAACTCGTTATCGTCTGGTTTATTTCCGGACGCCGAAAATTTACTTGATTGGGCTTACAAGCTTTACAAGAAAGGCAGGAGCATGGAGATCATGGACCCAACTTTAGCATCATCAGCTGACCCTGACCAAGTTACAATGTGCATTCAGATAGGATTGCTTTGCACACAAGGCGATCCGCACCTACGGCCGACCATGCCACATGTAGTTTTGACCCTGTCGAGGAGACCTGGTACTTTGGAGGAACCAACAAGACCGGGAATGCCTGGTTCTCGATATAGAAGAACACGTAGGACAAGCGTATCGTCCTCCAATGCTGGAACTTCTGGTGCATCCGATTCCTATGCTTCGACGACCAATACTACTGGAACTATTACTGCAGCGGCAACTGCAACTGCAAATGAGATTGCTTCTGGTTCTTCTTCAGTTAGTCAAGGATATGTTACTCGTAGGAAAACTATTACTGCAACCGAAAACGAAATTGCTTCTGGTTCTTCTTCAGTTAGTCAAGGATACGATACTCGTGGGAAACGTCCCATGGAAGGAATGGCTTGCTTCTTCTGCATTTCTGTGACCAAAAATGTGGCTCTCGCTTCACTCAATCCCAGCGACGACTCTCACTCGCCTCCTCCCAAAACCAATGGCGCCGCCGAAACTATTCCGGTCAACAATCCACAGTTACGCCGGCGGCAGCGGCGGCTTCCAAAACCTCGTCGGCCCTCCGTTATTGAAATCGAACGTGCTATTGGTGCCGGAAGGGATTTGGAAGAAGATAGGAAGGCGGCATTTGACATGTTTTTGATGAGTTTTACGGGAAAATATGAAGGGGCACTCATGAAGAAGCTTCGCGAGACAGGGGAATGGGTAACTGATCAGACTGAAACCAAATTTCAAGCTTCAGGAAAATCGTTTCTGCTGTTTACGTTTCAATGGGTTCTTCCAATTTGGGCATTCTCACTCCTTGTGGCTTCTGGGGTCATTAAGTTACCATTCAACACTCCATTTCTTGATCAACTTCTTACGTAA 1956 45.35 MVVDWVNSCTCFCLRSLFYISQIKDQISIPHFSVSIPQSHPHHQQQQQQQQQQPFFDPTSMTKSKSMLHNLMRPFRFGSSRDSQGEDDLEQIAANEKKFFRFETLVEATNNFHPTNKLGQGGFGPVFKGKLKDGRVIAVKKLSQYSKQGKKEFMTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVTNESLDKLLFKASRRGELDWKMRYGIICGVARGLQYLHVDSHNVIIHRDIKAGNVLLDDKWVPKIADFGMARLFPEDQTHVNTRVSGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELISGQRNSLSSGLFPDAENLLDWAYKLYKKGRSMEIMDPTLASSADPDQVTMCIQIGLLCTQGDPHLRPTMPHVVLTLSRRPGTLEEPTRPGMPGSRYRRTRRTSVSSSNAGTSGASDSYASTTNTTGTITAAATATANEIASGSSSVSQGYVTRRKTITATENEIASGSSSVSQGYDTRGKRPMEGMACFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPVNNPQLRRRQRRLPKPRRPSVIEIERAIGAGRDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLLT 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5245261 5249684 - CmaCh04G010120.1 Cma04g01012 292093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01012 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Cma04g01012 651 CDD STKc_IRAK 118 385 - -
Cma04g01012 651 MobiDBLite consensus disorder prediction 383 429 - -
Cma04g01012 651 MobiDBLite consensus disorder prediction 510 534 - -
Cma04g01012 651 MobiDBLite consensus disorder prediction 34 60 - -
Cma04g01012 651 Gene3D Transferase(Phosphotransferase) domain 1 188 391 - -
Cma04g01012 651 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 63 433 - -
Cma04g01012 651 Gene3D Phosphorylase Kinase; domain 1 78 187 - -
Cma04g01012 651 SMART serkin_6 112 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01012 651 PANTHER RECEPTOR-LIKE KINASE 63 433 - -
Cma04g01012 651 MobiDBLite consensus disorder prediction 405 429 - -
Cma04g01012 651 Pfam Protein tyrosine and serine/threonine kinase 115 381 IPR001245 GO:0004672|GO:0006468
Cma04g01012 651 ProSiteProfiles Protein kinase domain profile. 112 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01012 651 SUPERFAMILY Protein kinase-like (PK-like) 98 396 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01012 Cma-Chr4:5245261 Cma13g00711 Cma-Chr13:6409064 3.35E-103 dispersed
Cma04g00066 Cma-Chr4:312376 Cma04g01012 Cma-Chr4:5245261 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68495 PF07714 PK_Tyr_Ser-Thr 8.60E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01012 - - cmax:111486649 826.239