Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01013 ATGAACATGGCTACGCTTCAGACATGGAGGAAAGCTTATGGCGCTCTCAAGGATTCTACCAAAGTCGGCCTTGCCCATGTCAATAGCGATTTTGCGGATTTGGATGTGGCAATAGTCAAAGCTACTAACCACGTCGAGTGCCCGCCGAAAGAGAGACACCTCAGGAAAATTTTGGTTGCTACATCGGCAATCAGGCCCCGTGCTGATGTTGCTTATTGCATTCATGCCCTTGCTCGACGATTGTCCAAGACGCGTAATTGGACGGTAGCTTTGAAAGTGTTAATAGTCATACATAGGACCTTGAGGGAGGGCGACCCAACATTCAGGGAAGAACTTTTGAATTTTACGCAAAGAGCTAAAATCCTTCAATTATCCAATTTTAAGGATGATTCAAGTCCTATTGCTTGGGATTGCTCTGCATGGGTACGTACATATGCATTGTTTTTAGAGGAGCGACTCGAATGTTTCAGGATACTAAAGTATGACATTGAATCTGAACGCCTGCCAAGACCTGCCCAAGGTCAGGATAAGGGCTACAGCAGAACCAGGGAACTGGACAGTGAAGAACTGTTGGAACATTTGCCTGCTTTGCAACAGCTGTTGTATCGTCTTATTGGCTGCAAGCCGGAAGGAGCAGCTATTGGGAATTATGTTATACAGTATGCCTTGGCACTGGTATTGAAAGAGAGCTTTAAAATCTATTGTGCTATTAATGATGGAATAATAAATCTTGTTGACAAGTTTTTTGAGATGCCAAGACACGAGGCTATCAAAGCCCTTGATATCTATAAAAGAGCTGGCCAACAGGCAGGAAGCCTATCAGATTTCTATGATATTTGCAAAGGGTTAGAACTTGCTCGGAATTTCCAGTTTCCTGTTTTAAGAGAGCCCCCACAGTCATTTCTTAATACGATGGAAGAGTATATTAGGGAGGCACCACGAGTTGTTACAGTACCGAATGAACCACTGCTGCAACTTACTTACAAGCCGGAAGACTCTCCTTCAGAAGATCCGAACTTACCAACAGATGAAACAGAGGCTTCTCCTTCAGATGATCTTTCTATTACTCCTGTTGAGACGGCTCCACCACCACCTCCAGCACCAGCTACTGCTCCTGAAACCCATTCAGAGACTGGAGATTTATTGGGATTGAGTCTTGCTACCACAGAAGTATCCGCCATTGAGGAGAGAAACGCTTTGGCTTTAGCTATAGTTCCTTCTGGTGATGCAGCAGCGTCCACTTTTCATTCCAATGGTGTGCAGGCAAAGGATTTCGATCCTACTGGTTGGGAGCTAGCCTTGGTCACCACTCCAAGTGGTAACCTTTCATCAGCTAATGAGAGACAACTGGCTGGTGGGTTGGACACGCTCACTCTCGATAGTTTATATGATGAAGGTGCATATAGAGCTTCTCTACAGCCAGTGTACGGTAAGCCTGCACCAAACCCATTTGAAGTGCAAGATCCGTTTGCATATTCAAATGCCGTCGCTCCACCTCCATCGGTTCAAATGGCGCCACTAGCTCAGCAGCAGGCGGCCAATCCTTTTGGTCCTTACCAATCCACCTTCCCACAGCAGCAACAACAACCATTTACAATGGACCCAACAAATCCTTTTGGTGATGCAGGTTTCAGTGCATTCCCTGCTCCTAACCACCATACCGTACCCACAAGCAATCCATTCGGAAGCACAGGCCTGCTGTAG 1704 46.07 MNMATLQTWRKAYGALKDSTKVGLAHVNSDFADLDVAIVKATNHVECPPKERHLRKILVATSAIRPRADVAYCIHALARRLSKTRNWTVALKVLIVIHRTLREGDPTFREELLNFTQRAKILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIESERLPRPAQGQDKGYSRTRELDSEELLEHLPALQQLLYRLIGCKPEGAAIGNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALDIYKRAGQQAGSLSDFYDICKGLELARNFQFPVLREPPQSFLNTMEEYIREAPRVVTVPNEPLLQLTYKPEDSPSEDPNLPTDETEASPSDDLSITPVETAPPPPPAPATAPETHSETGDLLGLSLATTEVSAIEERNALALAIVPSGDAAASTFHSNGVQAKDFDPTGWELALVTTPSGNLSSANERQLAGGLDTLTLDSLYDEGAYRASLQPVYGKPAPNPFEVQDPFAYSNAVAPPPSVQMAPLAQQQAANPFGPYQSTFPQQQQQPFTMDPTNPFGDAGFSAFPAPNHHTVPTSNPFGSTGLL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5252443 5263154 - CmaCh04G010130.1 Cma04g01013 292094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01013 567 ProSiteProfiles ENTH domain profile. 26 163 IPR013809 -
Cma04g01013 567 MobiDBLite consensus disorder prediction 551 567 - -
Cma04g01013 567 MobiDBLite consensus disorder prediction 514 535 - -
Cma04g01013 567 MobiDBLite consensus disorder prediction 514 567 - -
Cma04g01013 567 MobiDBLite consensus disorder prediction 326 379 - -
Cma04g01013 567 CDD ANTH_N 34 156 - -
Cma04g01013 567 MobiDBLite consensus disorder prediction 340 355 - -
Cma04g01013 567 PANTHER CLATHRIN ASSEMBLY PROTEIN 3 550 IPR045192 GO:0048268|GO:0072583
Cma04g01013 567 Gene3D - 8 163 IPR008942 -
Cma04g01013 567 PANTHER OS05G0549000 PROTEIN 3 550 - -
Cma04g01013 567 Gene3D ANTH domain 175 325 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cma04g01013 567 SMART enth_2 32 163 IPR013809 -
Cma04g01013 567 Pfam ANTH domain 33 311 IPR011417 GO:0005543
Cma04g01013 567 SUPERFAMILY ENTH/VHS domain 33 164 IPR008942 -
Cma04g01013 567 SUPERFAMILY GAT-like domain 180 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01013 - - - csv:101205968 1025.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01013 Cma04g00065 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00065 Cma-Chr4:305979 Cma04g01013 Cma-Chr4:5252443 0 dispersed
Cma04g01013 Cma-Chr4:5252443 Cma12g00911 Cma-Chr12:6997474 0 dispersed
Cma04g01013 Cma-Chr4:5252443 Cma11g00519 Cma-Chr11:2463232 1.77E-138 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g460 . . . . . . . . Cmo04g01091 . Cma04g01013 Cma04g00065 Car04g00949 Car04g00062 . . . . . . . . . . Cla07g00570 Cam07g0596 Cec07g0663 Cco07g0636 Clacu07g0599 Cmu07g0633 Cre07g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01148 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001235 1 2 1 3 2 3 4 3 2 2 2 2 3 1 2 4 3 4 4 3 2 2 2 2 3 3 2 6 2 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01013 Cma_Chr04 FPKM 23.4417 26.931208 14.328725 16.411654 20.364214 21.029015 20.090614 21.868221 21.561378 20.678589