Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01023 ATGACAATGGAGGAGGACGTCGTGCTGCGCGACGTCACCAATGCTGGCGTTGTCATCAGCGACCGCATTTCTAGAGAAGTTGCCACTCAACTTGATCTGGAGGAAGCGCTGGAAGCTTCCAGATACGCTAGCGATCCGTATACAACCCACCCTAGAGAGTGGCCCCCTCTGGTGGAAGTGGTAGATACTTGGGAGTTGCCTCAAGTGCTTATAGAAAGATATAATGCCGCCGGCGGGGAAGGAACTGCCTTATGTGGAATATTTCCGGAAATACGAAGAGCTTGGGCATCTGTTGATAATTCTTTATTTCTTTGGCGATTTGACAAGTGGGATGGTCAATGTCCTGAGTTTAATGTGGAGGAGCAAGCCATCTGTGCCGTTGGCCTCACCAAATCCAAGCCTGGTGTTTTTGTTGAAGCAATACAATATCTTTTAATTCTAGCTACGCCAGCAGAGTTGATTCTTGTAGGAGTATGCTCTTCTGGTGGTGTTGATGGTACGGATCCATATGCAGAGATTTCGCTCCAGCCTTTGCCAGAGTATACTATAACATCCGATGGAGTCACTATGACCTGCATCACTTGTACTGACAAAGGACGAATTTTTTTGGCTGGCCGTGATGCCAACATTTATGAACTTCATTACACTTCTGGTTCTGGTTGGCAAAAGCGCTGTCGTAAAATTTGCCTAACTTCTGGTTTGGGAAGTGTGATATCAAGATGGGTTGTGCCAAATGTATTCAAGTTTGGAGCTGTTGATCCCATTGTTGAAATGATCTATGATAATGAAAGATGCATTTTATATGCAAGAACTGAGGAAATGAAAGTTCAAGTATTTGTGTTGGGACCCAATGGTGATGGACCGCTTAAGAAAGTAGCAGAAGAAAGAAATCTGATCAATCAGAGAAATGGAATGTATGGAAGTAGACAGTCAAAAGGACCTAGAACTATGAATCGGTCAGTAATGCCATCTATTGTCTGCATGTCACTCTTATCTACAGTTGAATCGAAGTCATTGCACCTTCTAGCAGTTCTATCAGATGGTAGAAGAATGTATTTGACTACTTCACCATCAAACGGAAACTTGGGTGCATATAATTCCAGCCATCAGACACCAAGTTGTTTAAAAGTCGTGGCTACAAGGCCTTCTCCTCCTCTAGGTGTTGGTGGGGGACTTACATTTGGTGCCAACTCTGTTTCTGGTAGACCTCAAAATGAAGAGCTGTTGTCAAAGGTCGAGACAGCATTTTACTCTGCTGGAAATCTTGTCCTCTCTGATTCATCACCACCAACTGTATCTTCCCTTCTCCTTGTTAGCAAGGATCCGGCAGCACAATCCTCCATGTCTGGTACTTCGTCCTTAAATGCAAGGACTTCTTTTGCTTTAAGGGAAACTGTTTCTTCTCTTCCTGTTGAAGGTCGAATGCTTTTTGTAGCAGATGTTTTACCCTTACCAGATGCTGCAGCCACTATGCAGTCTTTATATTCACAGATTGAATTTGGGGTGTCGGATTTCCCAGATGAGCATAGTGAAAAAGCAGTTGGAAAACTGTGGGCAAGAGGAGATCTATCTACCCAACACATATTACCTAGGAGGAGACTTGTTGTATTCAGTACCATGGGAATGATGGAGATAGCTTTCAACAGGCCTGTAGATATTTTGAGAAGGTTGTTTGAGTCTAATTCGCCAAGATCAATTTTAGAAGACTTCTTCAAAAGGTTCGGAGCTGGTGAAGCAGCTGCCATGTGTTTAATGTTGGCTTCAAGAATTGTCCATTGTGAAAGTCTCATAACCAATGTCATTGCAGACAAGGCAGGTGAAGCTTTCGAGGATCCGAGAATAGTTGGAATGCCTCAACTTGGAGGCAGTACTGCCTTGTCAGACTCAAGAACTGCTGCTGGTGGGTTTAGCATGGGTCAGGTTGCTCAGGAGGCTGTGCCAGTTTTTTCAGGTGCACATGAAGGACTTTGCTTATGCTCATCAAGATTGCTTTTTCCACTCTGGGAACTTCCTGTTGTGGCTGTTAAAGGTATCTCAGATTCCGCAAATACTTCACACAATGGACTAGTTGCATGTAGACTTTCTGCTGGAGCCATGCAAATCCTTGAGAACAAGCTCCGCGCTCTTGAGAAGTTCCTAAGGTCGAGAAGGAACCAGCGAAGAGGTCTTTACGGTTGTGTAGCTGGCTTGGGAGATGTTACAGGTTCAATTCTTTATGGTACTGGTTCAGATCTTGTTTCTAGTGATCGGAATATGGTGAAAAGCATTTTTGGTACATACTCAAGAAACATGGAATCTGCTGGGACTGGAGCTTCTAATAAAAGGCAGAGATTACCTTACAGCCCTGCTGAGTTGGCAGCCATGGAGGTTAGGGCAATGGAATGTATCAGGCAGCTGCTGCTGAGATCTGCTGAAGCTTTATTTTTGCTTCAGCTTCTTTCTCAACATCACTTAACACGCTTGGTTCAGGGCTTAGATGATAGTTTTAGGCAGGCAATAGCTCAATTGACTTTTAATCAGCTTGTTTGTTCAGCAGAGGGTGATAATCTTACGACAAGACTTATATCTTCTCTAATGCAGTACTATACTGGTCCTGATGGCAGGGGAACTGTAGATGACATTAGTGGGAGATTAAGGGAAGGCTGTCCAAGCTACTTTAAAGAGTCTGACTATAAATTTTTCCTAGCCGTGGAGTGTCTGGAGAGAGCTGCTGTAACTCTTGACCCAATGGAGAAAGAGAATCTTGCTAGGGAAGCCTTTAATTGTCTGAGTAAAATTCCAGAGTCTGCGGATTTACGAACTGTATGCAAATGCTTTGAGGATTTAAGATTCTATGAAGCTGTAGTTCGTTTGCCTCTGCAGAAGGCCCAGGCTCTTGACCCTTCAGGCAATGCTTTCAATGATCAAATTGATTTGGCTGCTCGAGAACGCGCACTTTCTGAGCGTGAGCAGTGCTATGAGATTATTATAAGTGCTCTACGTTCACTAAAAGGTGATGTCTCACTGAAGGAATTTGGGTCTCCTATGAAGCCTGCTGCTTCAAGGTCCATTCCTGATATGGCATCACGTAGTAAATATATATGCCAGATTGTTCAGCTTGGAGTTCAATCCCCGGACAAAATTTTCCATGGTTACTTGTATCGGTCTATGATTGATTTGGGGCTTGACAATGAATTGTTAGAATATGGGGGACCAGATTTGGTACCGTTTCTTCAAAATGCTGGACGGCATCCTATACAAGAGGTTCGAGCTGTCTCAGCTTTAACAGCTGGGGCTTCTCCAATTGGTCAGTCTGGAGCAGTTGGCGCATCAAATGAAGCCAAATTTTTTGATCTCTTAGCTCGATACTATGTTATGAAGCGGCAACATTTGCTTGCTGCTCATGTGCTGCTAAGATTAGCTGGTAGACGCTCTTCTGATCCTGGGGATGTTCCTACTTTGGAGGAGAGGTGCCAATACTTGAGCAATGCAGTTTTACAAGCAAAGAATGCAAACAGTAGCAAGGGGTTGGCAACTTCTACCCCTGATACCTTAGACAATGGATTGCTTGAACAGCTTGAAGGGAAACTTGCTGTTCTTCGTTTCCAGATGAAAATTAAGGAGGAACTGGAGGCTTTAGCTTCAAGAATAGAAGCCGTGCCAAGTACATCTGATTCAGTCCAAAATGAAATGATCCCAGAAAATGATTTGGTTGCTAATTCCAGTATTGCAGATACAGCTCGGCAAAAGGCCAAAGAGCTCTCATTAGAGTTAAAGACTATAACTCAGCTTTATAATGAATATGCCGTTCCATTTGAGCTATGGGAGATATGTTTGGAAATGTTGTACTTCGCAAACTATTCTTCTGATGACAATACTAGTATTGTCAGAGAAACTTGGGCTCGATTAATTGACCAAGCTCTTTCTACTGGTGGCATCGCTGAAGCTTGTTCAGTACTTAAAAGGGTTGGCTTCCACATTTACCCCGGCGATGGAGCTGGAATACCTTTGGAGTCTCTTTGTCTTCACCTTGAGAAGGCTGCATTGGAGAGATTAGATTCAGGTGTTGAATCTGTTGGGAACGATGATGTTGCAAGAGCCCTCATTGCTGTTTGCAAGGGTGCAACTGAGCCAGTATTGAATGCTTATGATCAATTGCTGTTGAATGGTGCAATGCTGCCCTCACCCAAACTCAGGTTACGCCTCCTCCAATCTGTGTTATTGGTACTCCATGAGTGGGCTATGTCCATATCTTCACAGACTACGGGTAGAAGTGCAACTGCAGCATCTCTGGTTCTTGTTGGAAATTACTCTTTGGATCAAATAGCTATTGCCAACCAAGGGGTTCGGGACAAGATAGCCAGTGCTGCGAACAGATATATGACTGAGGTTCGTAGGTTAGCCCTTCCACAAAACCAAACTGAGGCTGTCTATCGAGGCTTTAAGGAGCTTGAAGAGTCGCTATTATTTCGTTGGAATTTCTCCACTGTTCTAATCCCGATTGTCCCCTTCCATTGTTGTTGGGGTTGTGTTTCAACGGTTGTTTTTTTTTTTTTTTCATTTCTCGATTTCATTACTGGGAAAGCTGCCACGCAGCGATGTTCCGATTTGAGCAGGAGAAGATCCGAAAACGAAATTGATGTTTCCCAATTAGTCTATTTGATCAGTTGA 4650 43.7 MTMEEDVVLRDVTNAGVVISDRISREVATQLDLEEALEASRYASDPYTTHPREWPPLVEVVDTWELPQVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEFNVEEQAICAVGLTKSKPGVFVEAIQYLLILATPAELILVGVCSSGGVDGTDPYAEISLQPLPEYTITSDGVTMTCITCTDKGRIFLAGRDANIYELHYTSGSGWQKRCRKICLTSGLGSVISRWVVPNVFKFGAVDPIVEMIYDNERCILYARTEEMKVQVFVLGPNGDGPLKKVAEERNLINQRNGMYGSRQSKGPRTMNRSVMPSIVCMSLLSTVESKSLHLLAVLSDGRRMYLTTSPSNGNLGAYNSSHQTPSCLKVVATRPSPPLGVGGGLTFGANSVSGRPQNEELLSKVETAFYSAGNLVLSDSSPPTVSSLLLVSKDPAAQSSMSGTSSLNARTSFALRETVSSLPVEGRMLFVADVLPLPDAAATMQSLYSQIEFGVSDFPDEHSEKAVGKLWARGDLSTQHILPRRRLVVFSTMGMMEIAFNRPVDILRRLFESNSPRSILEDFFKRFGAGEAAAMCLMLASRIVHCESLITNVIADKAGEAFEDPRIVGMPQLGGSTALSDSRTAAGGFSMGQVAQEAVPVFSGAHEGLCLCSSRLLFPLWELPVVAVKGISDSANTSHNGLVACRLSAGAMQILENKLRALEKFLRSRRNQRRGLYGCVAGLGDVTGSILYGTGSDLVSSDRNMVKSIFGTYSRNMESAGTGASNKRQRLPYSPAELAAMEVRAMECIRQLLLRSAEALFLLQLLSQHHLTRLVQGLDDSFRQAIAQLTFNQLVCSAEGDNLTTRLISSLMQYYTGPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTLDPMEKENLAREAFNCLSKIPESADLRTVCKCFEDLRFYEAVVRLPLQKAQALDPSGNAFNDQIDLAARERALSEREQCYEIIISALRSLKGDVSLKEFGSPMKPAASRSIPDMASRSKYICQIVQLGVQSPDKIFHGYLYRSMIDLGLDNELLEYGGPDLVPFLQNAGRHPIQEVRAVSALTAGASPIGQSGAVGASNEAKFFDLLARYYVMKRQHLLAAHVLLRLAGRRSSDPGDVPTLEERCQYLSNAVLQAKNANSSKGLATSTPDTLDNGLLEQLEGKLAVLRFQMKIKEELEALASRIEAVPSTSDSVQNEMIPENDLVANSSIADTARQKAKELSLELKTITQLYNEYAVPFELWEICLEMLYFANYSSDDNTSIVRETWARLIDQALSTGGIAEACSVLKRVGFHIYPGDGAGIPLESLCLHLEKAALERLDSGVESVGNDDVARALIAVCKGATEPVLNAYDQLLLNGAMLPSPKLRLRLLQSVLLVLHEWAMSISSQTTGRSATAASLVLVGNYSLDQIAIANQGVRDKIASAANRYMTEVRRLALPQNQTEAVYRGFKELEESLLFRWNFSTVLIPIVPFHCCWGCVSTVVFFFFSFLDFITGKAATQRCSDLSRRRSENEIDVSQLVYLIS 1549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5312693 5327089 - CmaCh04G010230.1 Cma04g01023 292104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01023 1549 Gene3D - 893 1052 IPR042533 -
Cma04g01023 1549 Coils Coil 1183 1203 - -
Cma04g01023 1549 Gene3D - 531 882 - -
Cma04g01023 1549 Gene3D Nucleoporin, helical domain, central subdomain 1056 1158 IPR042537 -
Cma04g01023 1549 Coils Coil 699 719 - -
Cma04g01023 1549 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 875 1296 IPR007187 -
Cma04g01023 1549 PANTHER BNAC05G49530D PROTEIN 3 1486 - -
Cma04g01023 1549 Pfam Nup133 N terminal like 54 543 IPR014908 -
Cma04g01023 1549 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 3 1486 IPR004870 GO:0005643|GO:0006913|GO:0017056
Cma04g01023 1549 Gene3D - 1183 1449 IPR042538 -
Cma04g01023 1549 Coils Coil 1237 1257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01023 K14312 NUP155, NUP170, NUP157; nuclear pore complex protein Nup155 - csv:101212476 2691.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g496 . . . . . . . . Cmo04g01098 . Cma04g01023 . Car04g00958 . Sed06g0156 . . Bhi07g00387 Tan04g1515 Cmetu10g1305 Lac13g1337 . . . . . . . . . . . . . . . . . . Blo06g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01250 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007657 2 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01023 Cma_Chr04 FPKM 7.724876 8.731199 8.698574 9.722234 13.88131 13.167017 14.705595 10.098678 8.576027 9.626532