Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01027 ATGCACTCCGACGACAACGCCTTTCTCAGCCGTTCTTCCTATTTCGCTTCCCTGTGTGGCCGTTACCGTCGCCACCGGCCAATGCTCACTCCTACTGCCCTCAACGCCCTCAAATCCTCAAGGTCAATATCTTGGTCGCCGACGGGTAAGTTCCAGCAAACCTTGGCGGGATGTCTGGAGCTGAGTGGGATATCTCTGCATTCAGGGAAGGTTTCGAAAGTGAAGTTATGTCCGGAATTTGCAGGCAGAGGGAGGTATTTTGATTTCAAGTCCAAATTCATTCCTGCCTCGATCGATTATGCGGAAGAGTCGTCTCTTTGTACGACGCTCTCTAAGGATGGGTTTAAAATTCGAACTGTTGAGCATTTGCTTTCTGCCCTGGAGGCCATGGGGGTTGACAATTGTAGGATTGAGATTGCGAATGAAGACGCTAAAGACAGTGAAGTCGAGGTTCCAATTTTTGATGGATCTGCGTGTAAATGGGTGGATGCAATAGAGGAGGTTGGTCTTAAGTTGGCTATAGACCAGCGTGGCAACTGCTGTGAAAAAATGGCACCATATGTAAATCAACCTGTCTATGCGTGGAGGAATGACTGTTATCTTGTTGCTTTTCCAGCCTCAAAAGTTCGTATTACTTATGGAATTGACTTTCCTCAGGTGCCTAGCATTGGCTGCCAATGGTTTTCTACTGCTCCTTTGGACAATACATTCTATGCCGAGCAAATAGCTCCATCAAGAACCTTTTGCATTTACGAGGAGGTAGAGCAAATGCGTAATATGGGGCTCATAAGAGGAGGCTCAATAGAAAATGCTTTAGTGTGCAGTGTCAGTAAAGGTTGGATCAATCCCCCATTGCGTTTCCATGATGAACCTTGTCGCCACAAGGTTTTAGATTTCATTGGTGATATCTCACTTTTTGCACGGTTAGGCAGTCAAGGGCTTCCGGTGGCACACATGGTGGTTTACAAGGTAAGTTCTTTGTGA 984 46.54 MHSDDNAFLSRSSYFASLCGRYRRHRPMLTPTALNALKSSRSISWSPTGKFQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFKSKFIPASIDYAEESSLCTTLSKDGFKIRTVEHLLSALEAMGVDNCRIEIANEDAKDSEVEVPIFDGSACKWVDAIEEVGLKLAIDQRGNCCEKMAPYVNQPVYAWRNDCYLVAFPASKVRITYGIDFPQVPSIGCQWFSTAPLDNTFYAEQIAPSRTFCIYEEVEQMRNMGLIRGGSIENALVCSVSKGWINPPLRFHDEPCRHKVLDFIGDISLFARLGSQGLPVAHMVVYKVSSL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5335667 5338800 + CmaCh04G010270.1 Cma04g01027 292108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01027 327 SUPERFAMILY Ribosomal protein S5 domain 2-like 190 308 IPR020568 -
Cma04g01027 327 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 52 323 IPR004463 GO:0008759|GO:0009245
Cma04g01027 327 SUPERFAMILY Ribosomal protein S5 domain 2-like 51 171 IPR020568 -
Cma04g01027 327 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 28 325 IPR004463 GO:0008759|GO:0009245
Cma04g01027 327 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 52 307 IPR004463 GO:0008759|GO:0009245
Cma04g01027 327 Gene3D lpxc deacetylase, domain 2 187 326 IPR011334 GO:0008759|GO:0009245
Cma04g01027 327 Gene3D lpxc deacetylase, domain 1 50 177 IPR015870 GO:0008759|GO:0009245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01027 K02535 - csv:101205101 547.74