Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01029 ATGGCGGAGATTTCTGGCGATGGAGGTGGGTTTTTGCCGGAGGTTAGTAATGGACGAGCAGTAGATTCTCAGGCTACGCCGACACCCATTCCGGCACCGAATCCAACGTCGTTGACGGTGTCAGGATCTTTCAAAGAGGGGAAGAGCTCGTCGAGGCGCCGGACGTCGGTTAGGCCGAGTATGGACGCCGACGACTTCTTTAACTTGTTTCCCGGCTCGGATCCGGTGAAGTTGGAGCTCAATCGCCTCGAGAATGAAGTGCGAGATAAGGATCGAGAGCTTGGGGAAGCTCAGGCGAAGATCAAGGCATTAAAGTTGTCTGAGCGGCTTAGAGAGAAGGCAGTTGAAGAGCTGACTGAAGAACTATCAAAGGCTGAGGAGAAGTTAAAATTGACGGAATCTCTTCTTGAAAGCAAGAATCTTGAAATAAAGAAAATCAATGATGAGAAGAAGGCTTCAATGGCAGCTCAATTTGCTGCTGAAGCTACTCTTAGGAGGGTGCATGCTGCTCAAAAGGATGATGACATGCCTCCAATCGAAGCCATTCTTGCACCTTTGGAGGCTGAGCTCAAGCTTGCACGACAGGAGATTGCTAAGCTTCAAGATGACAATAAAGCATTGGATCGCCTTACCAAATCAAAGGAAGCAGCCTTGGTTGATGCTGAGAGGACTGTTCAAAGTGCCCTGGCCAAGGCCTCTATGGTGGATGATTTACAGAATAAAAATCAGGAGTTGATGAAACAGATAGAGATTTGCCAGGAAGAAAATAAAATCTTGGACAAGATGCACAGACAAAAAGTTGCAGAGGTTGAAAAATTAACGCAAACTGTGAGGGAGCTGGAGGAGGCTGTTCTTGCTGGTGGTGCTGCAGCAAATGCTGTGAGGGATTACCAGCGCAAAGTTCAAGAGATGAATGAGGAAAGGAAAACTCTTGATAGAGAGTTGGCTCGTGCAAAGGTAACAGCCAACAGAGTGGCTGTTGTAGTAGCAAATGAATGGAAAGATGCAAATGATAAGGTTATGCCTGTAAAACAGTGGCTTGAAGAACGAAGATTTTTGCAGGGAGAAATGCAGCAACTTCGTGATAAACTTGCTATAATGGAACGAACTGCTAAGTCTGAAGCTCTATTGAAAGAGAAGTATCAGCTGCGACTTAGAGTGCTTGAAGAGAGCTTGAGAGGGTCTTCTGGCAGTAACAATCGGAGTACTCCTGAAGGGAGAAGTATAAGCAATGGCCCCTCTCGTCGGCAATCTCTGGGTGGAGTTGACAACATTTCGAAATTAACTTCCAATGGATTTTTATCAAAAAAGACACCAGGTTCTCAGTATAGACCTTTGTCCTCAAGCAGTAGCACAGTGTTGAAACATGCTAAAGGCACGTCGAAATCATTTGATGGAGGCACGAGGTCATTGGACCGAGGAAAGGTGTCTTTAAATAGACTTCTACCCAGTTATTCATTCAATCAGTCCTGTGATGCAAGCAAGGACAGTGAAGTAAATAATGATTGGAAAAGTAATCCTGATGAAAAGGGAAACGAGTCTCCCACAATTGAGAGTGAAGACAGTGTTCCGGGTACGTTGTACGATTTACTTCAGAAGGAGGTTATAGCTTTGAGAAAAGGCGGTCATGAGAAAGATCAAATCCTTAAAGACAAGGATGACGCCATTGAGATGTTAGCAAAGAAGGTAGAGACGCTGACAAAAGCAATGGAGGTTGAGGCAAAGAAGATGAGAAGGGAAGTGGCTGCCATGGAGAAGGAGGTAGCAGCTATGCGTGTGGAGAAAGTGCAGGAGAACAAGGCAAAGCGATTTGGTGGCAGCACCAAGGGCCCCGTTAGTGCAGCACAACTGCATCCTGGAAGGAATGTTGGACGCGGTGGGTTGAATCGTAGCACTCAATAA 1902 46.06 MAEISGDGGGFLPEVSNGRAVDSQATPTPIPAPNPTSLTVSGSFKEGKSSSRRRTSVRPSMDADDFFNLFPGSDPVKLELNRLENEVRDKDRELGEAQAKIKALKLSERLREKAVEELTEELSKAEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALVDAERTVQSALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAIMERTAKSEALLKEKYQLRLRVLEESLRGSSGSNNRSTPEGRSISNGPSRRQSLGGVDNISKLTSNGFLSKKTPGSQYRPLSSSSSTVLKHAKGTSKSFDGGTRSLDRGKVSLNRLLPSYSFNQSCDASKDSEVNNDWKSNPDEKGNESPTIESEDSVPGTLYDLLQKEVIALRKGGHEKDQILKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKVQENKAKRFGGSTKGPVSAAQLHPGRNVGRGGLNRSTQ 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5343300 5348918 - CmaCh04G010290.1 Cma04g01029 292110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01029 633 Coils Coil 294 321 - -
Cma04g01029 633 Coils Coil 235 283 - -
Cma04g01029 633 Coils Coil 80 149 - -
Cma04g01029 633 Coils Coil 183 210 - -
Cma04g01029 633 MobiDBLite consensus disorder prediction 497 516 - -
Cma04g01029 633 MobiDBLite consensus disorder prediction 487 522 - -
Cma04g01029 633 Pfam Microtubule-associated protein 70 64 616 IPR009768 GO:0007010|GO:0008017
Cma04g01029 633 Coils Coil 560 594 - -
Cma04g01029 633 MobiDBLite consensus disorder prediction 393 467 - -
Cma04g01029 633 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 14 633 IPR009768 GO:0007010|GO:0008017
Cma04g01029 633 Coils Coil 343 370 - -
Cma04g01029 633 MobiDBLite consensus disorder prediction 393 472 - -
Cma04g01029 633 MobiDBLite consensus disorder prediction 599 633 - -
Cma04g01029 633 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2-LIKE 14 633 - -
Cma04g01029 633 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01029 - - - cmax:111483438 1106.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01029 Cma04g00077 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00137 Cma-Chr3:1651578 Cma04g01029 Cma-Chr4:5343300 0 dispersed
Cma04g01029 Cma-Chr4:5343300 Cma07g01088 Cma-Chr7:5853916 0 dispersed
Cma19g00520 Cma-Chr19:6091065 Cma04g01029 Cma-Chr4:5343300 8.63E-08 dispersed
Cma03g00587 Cma-Chr3:5270190 Cma04g01029 Cma-Chr4:5343300 1.52E-157 transposed
Cma11g01244 Cma-Chr11:8211200 Cma04g01029 Cma-Chr4:5343300 2.25E-46 transposed
Cma04g00077 Cma-Chr4:375771 Cma04g01029 Cma-Chr4:5343300 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01029 Cma_Chr04 FPKM 27.250088 29.858723 11.807337 10.959023 25.293114 26.310526 26.350567 4.07537 2.791382 2.890077