Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01032 ATGGCAATGTCGAAAAACAATGATGAACCGGAGGTTCAGAGCTCCGTCAAGAGGCTAAAATGCTCTAAGCACGACGATGAACAGCTCGAAAATGAAGAAGAAGAAGAAGAGCAGGTGAGTGAGCTTCCATTGAAGCCAGGCCTGTTCTTCTACCCAATGACGCCAACTTCCTTCGTGGTCTCCGATGCTCTGGAGCCCGATTTCCCAATCATCTACGTCAACAAAGTCTTCGAGATCTGTACCGGATATCGCGCCGATGAGGTCCTCGGCCAAAATTGTCGGTTCTTACAATATAGAGATACTCATGCACAAAGGCGCCACCCTTTGGTAGATCCAGTGGTTGTTTCTGAAATCAGAAGATGTCTTGAGGAAGGCGTTGAATTCCAAGGTGAACTCCTCAATTTCAGAAAGGATGGCACTCCTATGGTGAATAGGTTACGGCTTGCACCGATACATGATGATGATGGTACTGTAACACACATTATAGGAATTCAAGTGTTTTCTGAGACAAAGATAGACCTTAATCGGTTGTCATATCCCGTTTTCAAAGAAACTTGTGCAATAAAATATGATCTATCAGGCAAAAGTGTTCATCTGATTGATCAATCACCATTTGGTCAGCATAAAAAAATCTGTGGGATACTACAGCTTTCAGATGAAGTCTTAGCCCATAACATTTTATCACGCTTGACACCACGAGATGTTGCATCTGTTGGATCAGTGTGCCGAAGGATTCGTCAATTGACGAAGAACGAACATTTAAGGAAGATGGTATGTCAGAATGCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAGATAAACTTGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCTGTATGTTGGAGAAAACTGACAGTTAGGGGAGCTGTGGAGCCTTTACGTTGCAACTTTAGTGCTTGTGCAGCAGGTAATCGACTTGTATTATTTGGTGGGGAAGGAGTCAATATGCAGCCCATGGATGATACCTTTGTTCTCAATCTTGATGCTGCAAATCCAGAGTGGCGAAGAGTAAGCGTGAAATCCTCCCCGCCTGGACGTTGGGGCCACACTTTATCATGTTTGAATGGTTCTTGGTTAGTTGTTTTTGGTGGATGCGGCAGTCAAGGATTGCTCAACGACGTGTTTGTACTCGATTTGGATGCTCAGCAACCAACGTGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCTAAGCTGGTTGTTTCAGGTGGATGCACAGATGCTGGGGTGCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGACAAGCCAACCTGGAGAGAGATTCCCACATCCGGGACTCTTCCATCTAGATTGGGACATTCTCTGTCAGTTTACGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGTGGACACCTACGCTTACGATCGGGCGAGGCCTACACCATAGATTTAGAAGAGGAAGAACCCCGGTGGAGGCAACTTGAGTGCAGTGCATTCACTGGCATAGGCGGCCAGAGTGCTGTAGTTCCTCCACCAAGACTCGATCATGTAGCAGTCAGCATGCCCTGTGGAAGGATTATCATTTTTGGAGGCTCAATTGCCGGGTTACATTCACCATCTCAACTGTTCCTTTTGGATCCTTCCGAGGAGAAACCATCATGGAGGATTCTCAATGTTCCTGGACAACCACCAAAATTTGCTTGGGGACACAGTACTTGTGTGGTTGGAGGCACAAGAGTTTTGGTATTGGGCGGCCACACTGGGGAAGAATGGATACTCAATGAATTGCACGAACTCTGCTTAGCTAGTGGGCAAGATTCAGATCTTTGA 1884 46.18 MAMSKNNDEPEVQSSVKRLKCSKHDDEQLENEEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEICTGYRADEVLGQNCRFLQYRDTHAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKETCAIKYDLSGKSVHLIDQSPFGQHKKICGILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTDKLGWGRLARELTTLEAVCWRKLTVRGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTLPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPRWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASGQDSDL 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5357410 5360186 - CmaCh04G010320.1 Cma04g01032 292113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01032 627 Pfam PAS domain 64 165 IPR000014 -
Cma04g01032 627 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 11 624 - -
Cma04g01032 627 Pfam Galactose oxidase, central domain 308 358 - -
Cma04g01032 627 Pfam F-box domain 214 254 IPR001810 GO:0005515
Cma04g01032 627 Pfam Kelch motif 532 579 IPR011498 GO:0005515
Cma04g01032 627 Pfam Galactose oxidase, central domain 373 418 - -
Cma04g01032 627 Pfam Galactose oxidase, central domain 422 473 - -
Cma04g01032 627 Gene3D PAS domain 52 176 - -
Cma04g01032 627 MobiDBLite consensus disorder prediction 11 27 - -
Cma04g01032 627 PANTHER ADAGIO PROTEIN 3 11 624 - -
Cma04g01032 627 TIGRFAM sensory_box: PAS domain S-box protein 69 164 IPR000014 -
Cma04g01032 627 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 165 IPR035965 -
Cma04g01032 627 SMART pac_2 129 170 IPR001610 -
Cma04g01032 627 MobiDBLite consensus disorder prediction 1 41 - -
Cma04g01032 627 CDD PAS 54 164 IPR000014 -
Cma04g01032 627 Gene3D - 286 488 IPR015915 GO:0005515
Cma04g01032 627 Gene3D - 489 620 IPR015915 GO:0005515
Cma04g01032 627 SUPERFAMILY Galactose oxidase, central domain 295 612 IPR011043 -
Cma04g01032 627 SUPERFAMILY F-box domain 209 266 IPR036047 GO:0005515
Cma04g01032 627 Gene3D - 208 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01032 K12116 FKF1; flavin-binding kelch repeat F-box protein 1 - csv:101222712 1209.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01032 Cma04g00079 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01032 Cma-Chr4:5357410 Cma12g00887 Cma-Chr12:6721676 0 dispersed
Cma04g00079 Cma-Chr4:387732 Cma04g01032 Cma-Chr4:5357410 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01032 Cma_Chr04 FPKM 3.673491 3.792322 11.665487 13.887189 19.993315 20.778246 17.97938 16.418266 14.394041 14.354424