Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01042 ATGGTTTCAAGGTCGTATTCCAATTTACTTGAACTCGCCACCGGAGAATCGCCGTCTTTCGGCCGTATGAGCCGCCAAATCCCTCGGATTATGACTGTCGCCGGTTTAATCTCCGACATCGATGACGATCGACCAGAGAGCGTCTCATCGGAGCCGTCGTCCTCCTCCGCCCTTCGCGACCGGATTATCATTGTAGCCAATGAGCTCCCCATCAGAGCTCAGCGGAAATCAGGCGGCGGCTGGATTTTCAGCTGGGATGAAAATTCCCTTCTCCTGCAGCTGAAAGATGGGTTGGGTGATGATGATTTTGAGGTGTTTTATGTGGGTTGTCTCAAGGAAGATATTCAGGTAAATGAACAAGATGAGGTATCTCAAATACTCTTAGAAACATTTAAATGTGTACCAACGTTTCTGACCCAAGAGCTTTACACTAGTTACTATCATGGCTTCTGTAAGCAACAGCTATGGCCTCTGTTTCATTACATGTTGCCTCTGTCGCCTGACCTCGGCGGTCGGTTTAACCGACCGCTGTGGCAGGCTTATGTTTCTGTGAATAAGATCTTTGCTGATAGGATCATGGAAGTGATCAATCCTGAGGATGATTTTGTTTGGATTCATGATTATCATCTCATGGTGTTGCCTACTTTTCTTAGGAAGAGATTCAATAGAGTCAAGCTTGGATTCTTTCTGCATAGTCCGTTCCCGTCGTCTGAGATATATCGAACGCTACCGATACGGGAGGAGCTCTTACGAGCGCTCCTGAATTCGGATTTGATAGGGTTTCATACTTTTGATTATGCTAGGCATTTTCTTTCTTGTTGTAGTAGGATGCTTGGTCTAAGGTACGAGTCGAAACGGGGTTATATTGGGATAGAGTATTATGGTCGAACCATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGTCAACTTCAATCTGTTTTGAGCCTTCAGAAGACAGAGGAGAAGGTTGCAGAGCTTATCAAACAGTTTCGTGATCGAGATAGGATAATGTTGCTCGGTGTTGACGATATGGACATATTTAAGGGTATTAGTTTGAAGCTTTTGGCTATGGAGCAGTTGTTGATCACACACCCTGAATGGCAGCGGAAAGTAGTATTGGTGCAGATTGCCAATCCTGCGAGAGGCCGGGGGAAAGATGTGAAAGAAGTTCAGGATGAGACGAAGGCAGCTGTAAAGCGGATTAACGATACGTTTGGGAAACCCGGGTACGAGCCAGTTATGTTGATTGAGGAGCCACTGAAATTCTATGAGAGAGTTGCATATTATACCGTTGCCGAATGTTGTTTGGTCACTGCGGTTCGGGACGGTATGAATCTCATTCCATATGAGTACATTGTCAGCCGCCAAGGGAACGATAAGTTAGATAAGCTCTTGGGGTGTGAATCATCAGCTCTGAAGAAGAGTATGTTGGTTATATCTGAATTCATTGGGTGCTCTCCGTCCTTAAGCGGAGCAATTCGAGTTAATCCGTGGAATATTGATGCTGTAGCTGATGCAATGGAATGTGCATTAGAGATGGAAGACGCCGAAAAGCAGCTCCGCCATGAGAAGCATTTTAGATATGTGAGCACGCATGATGTTGGGTATTGGGCTCGAAGTTTCCTACTAGATTTGGAGAGGGCTTGTCGGGATCATGTGAGGCAGAGATGTTGGGGTATCGGGTTCGGTTTAAGTTTTAGAGTTGTGGCTCTTGATCCGAACTTCAGGAAGCTGGCAATGGAACACATATTTTCGACTTATAAGAGGACGAAATCTCGAGCTATTCTTTTGGACTATGATGGTACATTAATGCCTCAAGCTTCAATTGATAAGAGTCCTACTTCAAAATGCCTCGAAACTCTTAATACCTTGTGTCGAGATAAGAACAATACGGTATTCATTGTGAGTGCGAAAAGCCGAAAGAAACTTGCTGAATGGTTTGGCTCTTGTGAAAATCTCGGCATTGCTGCCGAGCACGGATACTTTATTAGGTGA 2001 44.88 MVSRSYSNLLELATGESPSFGRMSRQIPRIMTVAGLISDIDDDRPESVSSEPSSSSALRDRIIIVANELPIRAQRKSGGGWIFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIQVNEQDEVSQILLETFKCVPTFLTQELYTSYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRPLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLRYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLQKTEEKVAELIKQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQRKVVLVQIANPARGRGKDVKEVQDETKAAVKRINDTFGKPGYEPVMLIEEPLKFYERVAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGCESSALKKSMLVISEFIGCSPSLSGAIRVNPWNIDAVADAMECALEMEDAEKQLRHEKHFRYVSTHDVGYWARSFLLDLERACRDHVRQRCWGIGFGLSFRVVALDPNFRKLAMEHIFSTYKRTKSRAILLDYDGTLMPQASIDKSPTSKCLETLNTLCRDKNNTVFIVSAKSRKKLAEWFGSCENLGIAAEHGYFIR 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5399688 5401688 + CmaCh04G010420.1 Cma04g01042 292123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01042 666 Pfam Glycosyltransferase family 20 61 548 IPR001830 GO:0003824|GO:0005992
Cma04g01042 666 Gene3D Glycogen Phosphorylase B; 54 314 - -
Cma04g01042 666 SUPERFAMILY HAD-like 595 666 IPR036412 -
Cma04g01042 666 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 552 - -
Cma04g01042 666 CDD GT20_TPS 61 548 IPR001830 GO:0003824|GO:0005992
Cma04g01042 666 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 666 - -
Cma04g01042 666 Gene3D - 594 666 IPR023214 -
Cma04g01042 666 Gene3D Glycogen Phosphorylase B; 315 532 - -
Cma04g01042 666 Pfam Trehalose-phosphatase 598 666 IPR003337 GO:0003824|GO:0005992
Cma04g01042 666 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 666 IPR001830 GO:0003824|GO:0005992
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01042 Cma04g00086 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01042 Cma-Chr4:5399688 Cma06g00646 Cma-Chr6:3189733 0 dispersed
Cma04g00086 Cma-Chr4:429400 Cma04g01042 Cma-Chr4:5399688 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01042 K16055 - vvi:100252552 1170.22