Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01043 ATGGTGAAATCCGCGGCGGAGCGGCAGGGATCGACGGTGGCGCCGTTCGTGAAGAAGTTGTATGAGATGGTTGACGACGAGGCCACCAATTCGATTATCGCGTGGAGCCCTACGGATGATAGCTTTAGGATTGTGGACATCACCCAATTCTGTGTCCACATGCTTCCCAAGTACTTTAAGCACAGCAATTTCTCTAGCTTCATGCGCCAGCTTAATATCTATGGCTTTCGGAAAATAGATACAGATTGCTGGGTATTTGCAACTGATGGATTCATTAAGGGACAAAAACATCTCTTAAAGAACATCTACAGAAGGAAAAACATCCAGGGCACAGATCAGCATAACGCAGCGCAGCCCCAAGACAAGTCTGAGGGACAAGTTGAACTACATGATTATACAGAGCTGTGGAAGGAAGTTGAGAGTCTTAAAATTGATAAAAATTCTGTAATGCAGGAATTGGTTAAACTTAAGCAGCACCAAGAAACTTCAGAGGACAAGTTGCTCGTATTGAGAGACCGCCTTCAAGGCGTGGAAAAGAATCAACAGCAGATGCTGTCATTCTTAGTAATGGCTGTGCAAAGCCCTGGATTTTTGGTTCAGTTTCTTCAACCCAAAGAGAAGAATTGGCGCATGGCCGACACGAGCAATATGCTAGAACAAATACCAGATGATAAACAAGTACCTTCAAATGGTATGATAGTCAGGTATCATCAACGACCACTAGATGAACTGCCAGCAAATCTACTTCCAGCAGTGTCGGGTATGGGGAAACAGCAAGAATCTGATCCATTTCCTGATGGAATGAAGGACTTTTTCCTTAATTCTGACTTCATGAAAGTGCTTATGGATGAAAAGTTGTGTTTAGACAATCATACTCAATTTGTTCTTCCAGATGTACAAGATGTTGCATGGGAGCAGCTTCTTCTAGCTAGCCCTTTTTCTGGGAATTCAGATAATGCTACAAAAATTGACCACGAAAAACGATCTGTGGACAATGAGGACGATGAACTGGATATGGAAACAATCGATACTCGAACTCATGAAGAGAAGTCACAGGATTTTGAGATTCTAATCAGGCAAATGGAGTGTGAAACTTTTGAGATGTCACAAAGGTTGGATGAATCTTAA 1128 42.55 MVKSAAERQGSTVAPFVKKLYEMVDDEATNSIIAWSPTDDSFRIVDITQFCVHMLPKYFKHSNFSSFMRQLNIYGFRKIDTDCWVFATDGFIKGQKHLLKNIYRRKNIQGTDQHNAAQPQDKSEGQVELHDYTELWKEVESLKIDKNSVMQELVKLKQHQETSEDKLLVLRDRLQGVEKNQQQMLSFLVMAVQSPGFLVQFLQPKEKNWRMADTSNMLEQIPDDKQVPSNGMIVRYHQRPLDELPANLLPAVSGMGKQQESDPFPDGMKDFFLNSDFMKVLMDEKLCLDNHTQFVLPDVQDVAWEQLLLASPFSGNSDNATKIDHEKRSVDNEDDELDMETIDTRTHEEKSQDFEILIRQMECETFEMSQRLDES 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5404408 5407866 + CmaCh04G010430.1 Cma04g01043 292124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01043 375 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 346 IPR027725 -
Cma04g01043 375 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma04g01043 375 MobiDBLite consensus disorder prediction 320 350 - -
Cma04g01043 375 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma04g01043 375 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma04g01043 375 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma04g01043 375 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma04g01043 375 Gene3D - 8 106 IPR036388 -
Cma04g01043 375 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma04g01043 375 MobiDBLite consensus disorder prediction 315 350 - -
Cma04g01043 375 SUPERFAMILY Winged helix DNA-binding domain 11 105 IPR036390 -
Cma04g01043 375 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 346 - -
Cma04g01043 375 Coils Coil 139 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01043 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101203643 634.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01043 Cma04g00087 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01043 Cma-Chr4:5404408 Cma06g00639 Cma-Chr6:3140360 4.25E-62 dispersed
Cma04g00087 Cma-Chr4:434488 Cma04g01043 Cma-Chr4:5404408 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g517 . . . . . Bpe10g01006 . Bma15g00023 Cmo04g01113 . Cma04g01043 Cma04g00087 Car04g00973 . . . . Bhi07g00418 . . Lac13g1296 Hepe01g0614 . . Cla07g00520 Cam07g0555 Cec07g0608 Cco07g0580 Clacu07g0559 Cmu07g0596 Cre07g0928 . . Cone6ag0351 Cone9ag0384 Lsi04g00994 . Chy10g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01128 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004648 1 1 1 1 1 2 1 2 2 1 2 2 2 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34830 PF00447 HSF_DNA-bind 2.20E-28 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01043 Cma_Chr04 FPKM 2.432946 3.074905 3.461628 4.437292 1.760269 2.623087 1.805179 4.566494 4.36335 4.446794