Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01048 ATGAAGGGGGCTGTAATTAGTGGTTTTGTGCCTGTTTTTCCGGCCGCGATTGCGGTGGCGGTGGTGGCGGTGTTGGTCCATTTGTACTTCAACAGTGCATGGAGGAAGACGGCGGAGCTGAGGAGGAAGCTGCGAGAACAGGGCGTGATGGGTCCGCCACCGTCGGCTCTGTTCGGTAACTTGCCGGAGATGAAGAAGATCCAGTTGGAGGCAGCGGCCATGGCTTCTCCGCCGCGTAATGCGTCGGCGATTGTGGCTCATGATTATACATCCACCCTCTTCCCTTATTTCGCTAAGTGGAGGAAGCAATACGGTCCATTATACACATACTCGACAGGGACGCAGCAGCATTTGTACGCCACCCAGGTGGAGATAGTGAAGGACTTAACACTCTCCAACAATCTCAACTTGGGCAAGCCCTTGGTCATCAACAAAAGGTCCGCTCCCCTCTTTGGCCACGGCATCACCACCACCAACGGCTCCCTTTGGGTGCTGCAGCGCAAGATCATCGCCCCCGAGTTCTTCATGGACCGGGTCCGAGGCATGGTGGCACTGATGGCTAAGGCGGGGTCGTCCTTGATAGAAAAATGGGAGGCGAGGATCGGAGATGGATCCATGGTGGAGATTAAAGTGGATGAGGATCTCAAAGAATACTCGGCCGACGTGATAGCTAGAGCTTGCTTTGGGAGCTCGTACGAGAAGGGGAAGGAGATTTTCACGAAGATTAGGGATCTTCAGAAGCTGCTTTCCGAGGAGAACACTCTAGTTGGTTCTGTTCTTTTAAGTAACAAAATTTTTAAATCAAGCAAACACAGAAGAATCAAAAAGTTGGAAAAGGAGATCAACTCATCAATATGGGAGACGGTTCAACAGCGCCGAGAACAGTGCTCCAAAACCTCCTCATCCGACAAGGATCTATTGCAACTGATAATGGACGCCGCCATGACTGAGTCAAGTTTACCAGCCAAACAGTCCTCCAAAAACTTCATCGTTGACAACTGCAAGACCATGTATTTCTCCGGCCATGAAACCACCGCCATCGCCGCTGCCTGGTCCTTGATGCTCCTCGCCCTCCATCCCGATTGGCAAGACCGTATCCACTCCGAGTTTGCTCACACTTGCCCTGACGGTCGCTTTGACATAACGTCGATTTCTCAACTCAAATCGGTGAGTTTGGTGGTACAAGAAACGTTGCGGTTGTACCCACCGGGCGCATTCGTGTCGAGGGAGACATTTGAAGAGGTACGACTTGGGAACTTGATCGTTCCAAAGGGTGTCTGCATATGGACTTTGATTGCGACGTTACATAGAGATATTGAAATATGGGGAGAAGATGCGAATGAGTTCAAGCCAGAACGGTTTGCGGATGGTATATCTAAGGCTTGCAAGGTCCCACAACTCTACATTCCCTTTGGGGCAGGTCAACGATTGTGCTTGGGGAAGAACTTTGCATTGGTTGAGTTGAAGATCATAATTTCTCTTATAGTTTCTAAGTTTAGATTCTCGCTATCTCCTAAGTATTGTCATTCTCCTTCTTATAATATGATCGTGGGGCCTTCAAACGGTGTGAAGATTGTGCTTCAAAGGGTTTGA 1593 49.78 MKGAVISGFVPVFPAAIAVAVVAVLVHLYFNSAWRKTAELRRKLREQGVMGPPPSALFGNLPEMKKIQLEAAAMASPPRNASAIVAHDYTSTLFPYFAKWRKQYGPLYTYSTGTQQHLYATQVEIVKDLTLSNNLNLGKPLVINKRSAPLFGHGITTTNGSLWVLQRKIIAPEFFMDRVRGMVALMAKAGSSLIEKWEARIGDGSMVEIKVDEDLKEYSADVIARACFGSSYEKGKEIFTKIRDLQKLLSEENTLVGSVLLSNKIFKSSKHRRIKKLEKEINSSIWETVQQRREQCSKTSSSDKDLLQLIMDAAMTESSLPAKQSSKNFIVDNCKTMYFSGHETTAIAAAWSLMLLALHPDWQDRIHSEFAHTCPDGRFDITSISQLKSVSLVVQETLRLYPPGAFVSRETFEEVRLGNLIVPKGVCIWTLIATLHRDIEIWGEDANEFKPERFADGISKACKVPQLYIPFGAGQRLCLGKNFALVELKIIISLIVSKFRFSLSPKYCHSPSYNMIVGPSNGVKIVLQRV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5434158 5436589 + CmaCh04G010480.1 Cma04g01048 292129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01048 530 PANTHER CYTOCHROME P450 FAMILY MEMBER 18 525 - -
Cma04g01048 530 SUPERFAMILY Cytochrome P450 88 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS P450 superfamily signature 469 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS P450 superfamily signature 340 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS P450 superfamily signature 478 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 Gene3D Cytochrome P450 34 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS E-class P450 group I signature 349 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS E-class P450 group I signature 478 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS E-class P450 group I signature 329 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS E-class P450 group I signature 218 236 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS E-class P450 group I signature 468 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 PRINTS E-class P450 group I signature 101 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 Pfam Cytochrome P450 92 523 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01048 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 471 480 IPR017972 GO:0005506|GO:0016705
Cma04g01048 530 PANTHER CYTOCHROME P450 714A1-RELATED 18 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01069 Cma-Chr2:6366480 Cma04g01048 Cma-Chr4:5434158 1.71E-108 dispersed
Cma04g01048 Cma-Chr4:5434158 Cma17g00077 Cma-Chr17:381497 9.01E-159 dispersed
Cma04g01048 Cma-Chr4:5434158 Cma04g01050 Cma-Chr4:5437674 1.38E-53 proximal
Cma04g01048 Cma-Chr4:5434158 Cma04g01051 Cma-Chr4:5438509 3.24E-70 proximal
Cma04g01048 Cma-Chr4:5434158 Cma04g01052 Cma-Chr4:5439112 6.23E-130 proximal
Cma04g00094 Cma-Chr4:470113 Cma04g01048 Cma-Chr4:5434158 0 transposed
Cma15g00184 Cma-Chr15:848309 Cma04g01048 Cma-Chr4:5434158 5.33E-100 wgd
Cma04g00093 Cma-Chr4:468269 Cma04g01048 Cma-Chr4:5434158 2.61E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01048 K20661 - cmax:111484107 1028.08