Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01052 ATGGAGGCCACCATGACTGACTCAAGTTTACGAGCCAAACAGTCCTTCAAAAACTTCACCGTTGACAACTGCAAGACCATGTATTTTGTCGGCCATGACACCACCGCCGTCACCACCGCTTGGTCCTTGATGCTCCTCGCCCTCCATCCCGATTGGCAAGACCGTATCAGCTCCAAGTTTTCTCACACTTGCCCTAACGGTCGCTTCGACATGACGGCGATTTCTCAACTCAAATCGGTGAGTTTGGTGGTTCAAGAAACATTGCAGTTGTACCCGCCGGGCGCATTTGTAGCGAGGGAGACATTTGATGAGGTACAACTTGGGAACGTGGTTATTCCAAAGGGTGTCTGCATATGGACTTTGATACCGACGCTACGCAAAGAAATTGAAATATGGGGAGAAGATGCGAATGAGTTCAAGCCAGAACGGTTTGCAGACGGTATAGCCCAGGCCTGCAAGGTTCCACAACTCCACATGTCATTTGGAGTACGTCAACGATTGTGCTTGGGGAAGAACTTTGCATTGGTTGAGTTGAAAATCATAATTTCTCTTATAGTTTCGAAGTTTAGACTCTCGCTGTCTTTTGAGTATCGTCATTCCCCTTCTTTTAGAATGGTTGTGGGGCCTTCAAACCGTGTGAAGATTGTGGTCAAAGGGTTTAAATTAGAGTGTAAGAAGTTGAGTTACTAA 690 46.67 MEATMTDSSLRAKQSFKNFTVDNCKTMYFVGHDTTAVTTAWSLMLLALHPDWQDRISSKFSHTCPNGRFDMTAISQLKSVSLVVQETLQLYPPGAFVARETFDEVQLGNVVIPKGVCIWTLIPTLRKEIEIWGEDANEFKPERFADGIAQACKVPQLHMSFGVRQRLCLGKNFALVELKIIISLIVSKFRLSLSFEYRHSPSFRMVVGPSNRVKIVVKGFKLECKKLSY 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5439112 5439867 + CmaCh04G010520.1 Cma04g01052 292133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01052 229 Gene3D Cytochrome P450 3 220 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PRINTS P450 superfamily signature 159 168 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PRINTS P450 superfamily signature 168 179 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PRINTS P450 superfamily signature 82 93 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PRINTS P450 superfamily signature 30 47 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PANTHER CYTOCHROME P450 FAMILY MEMBER 3 211 - -
Cma04g01052 229 Pfam Cytochrome P450 22 200 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PRINTS E-class P450 group IV signature 168 186 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PRINTS E-class P450 group IV signature 77 93 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PRINTS E-class P450 group IV signature 152 168 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PRINTS E-class P450 group IV signature 21 47 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01052 229 PANTHER CYTOCHROME P450 714A1-RELATED 3 211 - -
Cma04g01052 229 SUPERFAMILY Cytochrome P450 20 218 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01052 Cma-Chr4:5439112 Cma17g00077 Cma-Chr17:381497 2.08E-64 dispersed
Cma04g01048 Cma-Chr4:5434158 Cma04g01052 Cma-Chr4:5439112 6.23E-130 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01052 K20661 - cmax:111484107 363.614