Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01053 | ATGGGTTGCATTTTTTGTGCCAATACGACTCGGCTTCCTCGGGCACTCCCTTCCCTTCCACCCTTTGCTTTTCTCTACGTCCCATTCTCCATTCAATTCTTCATTTTTTCCTCACCCAGTTTCTTCAATTTTCTTTTCCTTCCCCAAATCCACCGGCGACCCTCTGACCTATCTCCCTCCGCCGCCTTCCGACGGAATCACCGTCATTACCAGCTGTTTAGGCCTGTTTTCTCGTTGCCCATCATCGTAATTTTGTTTTCAGGCGGTGGGATTTCGAGGGGTCGGATCGGTATAGGTTTTGAAAGGAGGGGGAAGAAAATGGAGACATCGGCTTCTAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAAATGCTCGTACCTCCTCCAGATATGGGGTCTCGCTCCCTTCGCTGAATTTCTTCCGTTCGCCTTTGTCCGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGTTGTTCGTCATGAATCGGAGCCTGTAATCAACGCCGCTTCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAAAATCACTTAATGACCACTTCTTCGTCTTCTACTGCCTCAACCTCTTCCGGTAATACCGTCTCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAAATCCTTCTCCCAGTGTGTTGTTGCCGCCAAATCAGGCTCCGGTTGGACAAGCGGGTTATGAGCAAAATGCCAGGCTTCCTATTTCTGGGGATCAGCCGGAATCCCCTGACGAGGAACGAGTTCCTTTGGTGTCAACTTCTTCTTCATCTATTCAATCTGGAAGTAGTCGTGTCCATGCAGAATCTGGAAATGGCACGGAAGAGACTGCCAATAGGGATTCGTCATACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTGATTGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGGTATCAGCTGTTCTGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTTTGTCCTTGCCGGTACTTCTATCGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTACCCGTTAGTCATGCTTCCACCAAAGACAGTTCCACCTTTTTGGCATGCCTTGTACATCATTTTGGTTAACGATACGATGGTGAGGCAGTTGGCAATGGCTTTCAAATGTCTTCTTCTTATCTACTACAAAAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACGCTTGTGGAATACTCTCTTCTGTTGTACCGTGCATTATTACCAGCACCCGTATGGTACCGGTTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACCTTCAAGCTAACGTCTGTGGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACAAAAAGAAGTTCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATCTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTTTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTCGTAAAGCCTGCAGAACTTCGAACATTCGGTGATGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG | 1770 | 45.2 | MGCIFCANTTRLPRALPSLPPFAFLYVPFSIQFFIFSSPSFFNFLFLPQIHRRPSDLSPSAAFRRNHRHYQLFRPVFSLPIIVILFSGGGISRGRIGIGFERRGKKMETSASNSDPYSNSSSPTNARTSSRYGVSLPSLNFFRSPLSVILDYSGILPTRVVRHESEPVINAASTPDLRVYSQNQNHLMTTSSSSTASTSSGNTVSSGEVSIRIIGSGEQNPSPSVLLPPNQAPVGQAGYEQNARLPISGDQPESPDEERVPLVSTSSSSIQSGSSRVHAESGNGTEETANRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWVSAVLYKSNDIVKKQTALKGERKIFVLAGTSIAFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALYIILVNDTMVRQLAMAFKCLLLIYYKNGRGHNFRRQGQILTLVEYSLLLYRALLPAPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 589 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5440327 | 5447736 | - | CmaCh04G010530.1 | Cma04g01053 | 292134 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01053 | 589 | ProSitePatterns | Zinc finger RING-type signature. | 543 | 552 | IPR017907 | - | |
Cma04g01053 | 589 | SMART | ring_2 | 528 | 565 | IPR001841 | - | |
Cma04g01053 | 589 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 107 | 589 | - | - | |
Cma04g01053 | 589 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 107 | 589 | IPR044235 | GO:0061630|GO:1904294 | |
Cma04g01053 | 589 | ProSiteProfiles | Zinc finger RING-type profile. | 528 | 566 | IPR001841 | - | |
Cma04g01053 | 589 | CDD | RING-HC_RNFT1_like | 527 | 566 | - | - | |
Cma04g01053 | 589 | SUPERFAMILY | RING/U-box | 521 | 571 | - | - | |
Cma04g01053 | 589 | MobiDBLite | consensus disorder prediction | 110 | 129 | - | - | |
Cma04g01053 | 589 | Pfam | Zinc finger, C3HC4 type (RING finger) | 526 | 569 | - | - | |
Cma04g01053 | 589 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 502 | 575 | IPR013083 | - | |
Cma04g01053 | 589 | MobiDBLite | consensus disorder prediction | 107 | 129 | - | - | |
Cma04g01053 | 589 | MobiDBLite | consensus disorder prediction | 214 | 293 | - | - | |
Cma04g01053 | 589 | MobiDBLite | consensus disorder prediction | 260 | 293 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00274 | Cma-Chr3:3712092 | Cma04g01053 | Cma-Chr4:5440327 | 1.55E-144 | dispersed | |
Cma04g01053 | Cma-Chr4:5440327 | Cma07g01198 | Cma-Chr7:6577258 | 2.50E-135 | dispersed | |
Cma04g00096 | Cma-Chr4:475083 | Cma04g01053 | Cma-Chr4:5440327 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01053 | - | K22379 | csv:101207430 | 833.558 |