Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01053 ATGGGTTGCATTTTTTGTGCCAATACGACTCGGCTTCCTCGGGCACTCCCTTCCCTTCCACCCTTTGCTTTTCTCTACGTCCCATTCTCCATTCAATTCTTCATTTTTTCCTCACCCAGTTTCTTCAATTTTCTTTTCCTTCCCCAAATCCACCGGCGACCCTCTGACCTATCTCCCTCCGCCGCCTTCCGACGGAATCACCGTCATTACCAGCTGTTTAGGCCTGTTTTCTCGTTGCCCATCATCGTAATTTTGTTTTCAGGCGGTGGGATTTCGAGGGGTCGGATCGGTATAGGTTTTGAAAGGAGGGGGAAGAAAATGGAGACATCGGCTTCTAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAAATGCTCGTACCTCCTCCAGATATGGGGTCTCGCTCCCTTCGCTGAATTTCTTCCGTTCGCCTTTGTCCGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGTTGTTCGTCATGAATCGGAGCCTGTAATCAACGCCGCTTCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAAAATCACTTAATGACCACTTCTTCGTCTTCTACTGCCTCAACCTCTTCCGGTAATACCGTCTCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAAATCCTTCTCCCAGTGTGTTGTTGCCGCCAAATCAGGCTCCGGTTGGACAAGCGGGTTATGAGCAAAATGCCAGGCTTCCTATTTCTGGGGATCAGCCGGAATCCCCTGACGAGGAACGAGTTCCTTTGGTGTCAACTTCTTCTTCATCTATTCAATCTGGAAGTAGTCGTGTCCATGCAGAATCTGGAAATGGCACGGAAGAGACTGCCAATAGGGATTCGTCATACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTGATTGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGGTATCAGCTGTTCTGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTTTGTCCTTGCCGGTACTTCTATCGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTACCCGTTAGTCATGCTTCCACCAAAGACAGTTCCACCTTTTTGGCATGCCTTGTACATCATTTTGGTTAACGATACGATGGTGAGGCAGTTGGCAATGGCTTTCAAATGTCTTCTTCTTATCTACTACAAAAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACGCTTGTGGAATACTCTCTTCTGTTGTACCGTGCATTATTACCAGCACCCGTATGGTACCGGTTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACCTTCAAGCTAACGTCTGTGGTTGAGAAGATTCAATCATTCGTTGCTGCATTTAAGGCTCTATCACAAAAAGAAGTTCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATCTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTTTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTCGTAAAGCCTGCAGAACTTCGAACATTCGGTGATGGGTCAACCAGCTTACTCTTCCAGTTGTTTTAG 1770 45.2 MGCIFCANTTRLPRALPSLPPFAFLYVPFSIQFFIFSSPSFFNFLFLPQIHRRPSDLSPSAAFRRNHRHYQLFRPVFSLPIIVILFSGGGISRGRIGIGFERRGKKMETSASNSDPYSNSSSPTNARTSSRYGVSLPSLNFFRSPLSVILDYSGILPTRVVRHESEPVINAASTPDLRVYSQNQNHLMTTSSSSTASTSSGNTVSSGEVSIRIIGSGEQNPSPSVLLPPNQAPVGQAGYEQNARLPISGDQPESPDEERVPLVSTSSSSIQSGSSRVHAESGNGTEETANRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWVSAVLYKSNDIVKKQTALKGERKIFVLAGTSIAFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALYIILVNDTMVRQLAMAFKCLLLIYYKNGRGHNFRRQGQILTLVEYSLLLYRALLPAPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5440327 5447736 - CmaCh04G010530.1 Cma04g01053 292134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01053 589 ProSitePatterns Zinc finger RING-type signature. 543 552 IPR017907 -
Cma04g01053 589 SMART ring_2 528 565 IPR001841 -
Cma04g01053 589 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 107 589 - -
Cma04g01053 589 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 107 589 IPR044235 GO:0061630|GO:1904294
Cma04g01053 589 ProSiteProfiles Zinc finger RING-type profile. 528 566 IPR001841 -
Cma04g01053 589 CDD RING-HC_RNFT1_like 527 566 - -
Cma04g01053 589 SUPERFAMILY RING/U-box 521 571 - -
Cma04g01053 589 MobiDBLite consensus disorder prediction 110 129 - -
Cma04g01053 589 Pfam Zinc finger, C3HC4 type (RING finger) 526 569 - -
Cma04g01053 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 575 IPR013083 -
Cma04g01053 589 MobiDBLite consensus disorder prediction 107 129 - -
Cma04g01053 589 MobiDBLite consensus disorder prediction 214 293 - -
Cma04g01053 589 MobiDBLite consensus disorder prediction 260 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00274 Cma-Chr3:3712092 Cma04g01053 Cma-Chr4:5440327 1.55E-144 dispersed
Cma04g01053 Cma-Chr4:5440327 Cma07g01198 Cma-Chr7:6577258 2.50E-135 dispersed
Cma04g00096 Cma-Chr4:475083 Cma04g01053 Cma-Chr4:5440327 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01053 - K22379 csv:101207430 833.558