Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01061 ATGCGAGGTTTGCTGAAGATGAAACGGCTTATTGAGCTCTTCGTCCTGTTCGTTTTGGCTCCACTCTGTGCTAGATGCGTAAACCTACCCTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCCGATGTTCAAGATCCGAAGCTGAAGCTCGCAACGTGGAACGAAGATGACGATAATCCCTGCAACTGGACTGGCGTCAAATGCAGTCCCGGATCCAATCGGGTCGTCGAACTCAACCTCGATGGATTCTCTCTCTCGGGTCGACTCGGCCGCGGACTTTTCCAGTTGGAGTTTCTACAGAGATTGTCGCTGGCGAAGAACAATCTTAGTGGAAATATAAATCCCAATTTCTCTCGGGTCGGCAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCCGGTATTGTTCCGGACGTTTTTAGTCAATGTGGGTCTCTGAGAGTCATCTCTTTGGCTAACAACAAATTTTTTGGGAAAATTCCTGATAGTTTGAGCTTGTGTGGGAGTCTTATTGCAGTTAACTTGTCGTCGAATCAGTTTTCGGGTTCTTTGCCTTCTGGAATTTGGTCTTTTAGTGGGCTTCGATCTTTGGACTTGTCTGATAATGCTCTGGTGGGTGAAATTCCTAATGTAATTGAGAATTTGTATAATCTGCGGACTCTTAACTTGAGCAGGAATCGATTTTCTGGACAGATTCCTGATGGTATTGGGAACTGTTTGCTTCTGAGATCCATTGATCTTAGTGGGAATTCTTTCTCTGGGAATCTTCCTCAGACAATGCAGAAACTTGTTTTGTGTGGTAATCTTATCTTAAGCAGGAATTTGTTTGAAGGAGATGTTCCAGAGTGGATAGGAGGAATGAAAAGCCTTGAAACTCTGGACTTTTCTGGGAACAATTTTACTGGCCGTATTCCTTCTACAATGGAAAATCTGCAATATCTAAAAGTATTGAATCTCTCTTCAAATGGTTTTACTGATAGCTTTCCGGAGTCTGTGATGAAATGCCAAAGCCTTTTGGCAATAGATTTCAGTCATAATTTGATCACGGGTAATCTTCCGGCAACTGGAAGTTTAGCCAAGCTGCAGTTTCTAAACCTGTCCGGGAATTCTTTTGTTGGTCCTATCCCAGAAACTATTGGAGATCTGAAATCTTTGAGCATTCTTGATTTGAGCTCGAATCGTCTGAACGTAACCATTCCTGATGCAATTGGAGGAGCTGTGTCCCTAATTGAGCTGAAGCTGGATGGGAATTTTCTAGAGGGTGAAATTCCCTCTTCAATTGGTCACTGTTCTTCCCTTACAAATCTGTTCATGTCACACAATAACTTAACTGGCCCGATACCAGCAGCATTAGCCAAACTCTCTTATCTACAAAATGTCGACTTATCCTTTAACAACCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCATATGTTCAATATTTCTCACAACGACTTCAACAGTGAGCTGCCTACTGGTGGATTCTTTAACACCATCTCCCCTTCATCCGTTGCTAGCAATCCATCCCTTTGTGGCTCTGTTGTTAACAAGTCTTGCCCTTCCGTTCTTCCAAAACCTATTGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCTCTGCCTCCAAGTAATAATCACAGAAGAAATAGAAATATCCTCAGCATTTCTGTGCTGATTGCCATTGGTGCCGCTGCTTTCATCATCATTGGTGTAATATCGATCACCATTCTCAACTTTCGAGTTCAATCACCCACGTCTTCTTCATCTGCAGCTGCACTTGCATTATCTGTTGGGGATGATTTCAGTCATTCCTCCAGTCCTGATGCAAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAGCTCGACTTTAGCACAGGTGCACATGCCCTGCTGAACAAGGATTGTGAGCTTGGGCGTGGTGGATTTGGAGCAGTTTATCGTACTGTTCTGCGGGATGGACACTCGGTTGCAATCAAGAAGCTTACTGTTTCTAGCCTTGTTAAGTCGCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTTGGGATTGTCAGGCACCAAAATCTAGTGGCACTTGAAGGTTATTATTGGACTCCCTCGCTACAGCTCCTTATATACGAATTCGTCTCTGGAGGTAGCTTGTATGGGTTGCTCCACGAAGCATCAGATGACTATGTCCTGCGATGGAACGAGAGATTCGACATAATTCTTGGGACAGCGAAAGGTTTGGCTCACTTGCATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACGTTCTTATTGATTGTAATGGTCAACCGAAGGTTGGAGATTATGGTCTAGCTAGATTGCTGCCAATGCTAGACCGTTATGTTTTAAGTAGCAAGATCCAAAGCGCACTTGGTTACATGGCACCAGAGTTTGCTTGCAGGACAGTAAAGATAACCGAAAAATGCGATGTTTATGGCTTTGGAATATTGATTCTAGAGGTGGTTACAGGGAAGAGACCTGTCGAGTACATGGAAGACGACGTTGCAGTCCTCTGCGACATGGTCAGAGTAGCAGTGGAAGAAGGAAACGTCGAAGAATGCATCGACAGCAAGCTGAGGGGGAATTTCCCTGTCGAAGAGGCCATTCCCGTGTTAAAATTAGGCTTGATATGCACCTCCCATGTGCCATCAAACCGGCCGGACATGAGAGAAATGGTCAAAATATTGGAGATGATCAAATGCCCATCTGAATTACAAGAGGAGTTGGGATAA 2775 43.75 MRGLLKMKRLIELFVLFVLAPLCARCVNLPLNDDVLGLIVFKADVQDPKLKLATWNEDDDNPCNWTGVKCSPGSNRVVELNLDGFSLSGRLGRGLFQLEFLQRLSLAKNNLSGNINPNFSRVGNLQVIDLSGNNFSGIVPDVFSQCGSLRVISLANNKFFGKIPDSLSLCGSLIAVNLSSNQFSGSLPSGIWSFSGLRSLDLSDNALVGEIPNVIENLYNLRTLNLSRNRFSGQIPDGIGNCLLLRSIDLSGNSFSGNLPQTMQKLVLCGNLILSRNLFEGDVPEWIGGMKSLETLDFSGNNFTGRIPSTMENLQYLKVLNLSSNGFTDSFPESVMKCQSLLAIDFSHNLITGNLPATGSLAKLQFLNLSGNSFVGPIPETIGDLKSLSILDLSSNRLNVTIPDAIGGAVSLIELKLDGNFLEGEIPSSIGHCSSLTNLFMSHNNLTGPIPAALAKLSYLQNVDLSFNNLNGTLPKQLSNLPNLHMFNISHNDFNSELPTGGFFNTISPSSVASNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHRRNRNILSISVLIAIGAAAFIIIGVISITILNFRVQSPTSSSSAAALALSVGDDFSHSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYRTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYGLLHEASDDYVLRWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNVLIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVRVAVEEGNVEECIDSKLRGNFPVEEAIPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5479046 5482987 + CmaCh04G010610.1 Cma04g01061 292142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01061 924 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Cma04g01061 924 Gene3D Ribonuclease Inhibitor 188 271 IPR032675 -
Cma04g01061 924 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 8 357 - -
Cma04g01061 924 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 359 921 - -
Cma04g01061 924 ProSiteProfiles Protein kinase domain profile. 641 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01061 924 Gene3D Ribonuclease Inhibitor 272 531 IPR032675 -
Cma04g01061 924 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Cma04g01061 924 Pfam Leucine rich repeat 271 326 IPR001611 GO:0005515
Cma04g01061 924 Pfam Leucine rich repeat 196 254 IPR001611 GO:0005515
Cma04g01061 924 SUPERFAMILY L domain-like 361 516 - -
Cma04g01061 924 SMART LRR_typ_2 218 242 IPR003591 -
Cma04g01061 924 SMART LRR_typ_2 385 409 IPR003591 -
Cma04g01061 924 SMART LRR_typ_2 194 217 IPR003591 -
Cma04g01061 924 SMART LRR_typ_2 481 505 IPR003591 -
Cma04g01061 924 SMART LRR_typ_2 290 314 IPR003591 -
Cma04g01061 924 SMART LRR_typ_2 122 145 IPR003591 -
Cma04g01061 924 SUPERFAMILY RNI-like 79 399 - -
Cma04g01061 924 Gene3D Phosphorylase Kinase; domain 1 630 717 - -
Cma04g01061 924 Gene3D Transferase(Phosphotransferase) domain 1 718 922 - -
Cma04g01061 924 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cma04g01061 924 CDD STKc_IRAK 647 911 - -
Cma04g01061 924 ProSitePatterns Protein kinases ATP-binding region signature. 647 670 IPR017441 GO:0005524
Cma04g01061 924 PRINTS Leucine-rich repeat signature 197 210 - -
Cma04g01061 924 PRINTS Leucine-rich repeat signature 385 398 - -
Cma04g01061 924 SUPERFAMILY Protein kinase-like (PK-like) 644 917 IPR011009 -
Cma04g01061 924 Pfam Protein tyrosine and serine/threonine kinase 643 910 IPR001245 GO:0004672|GO:0006468
Cma04g01061 924 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 357 - -
Cma04g01061 924 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 359 921 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01061 Cma15g00170 CCT
Cma04g00102 Cma04g01061 ECH
Cma04g01061 Cma15g00170 ECH
Cma04g01061 Cma04g00102 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01061 Cma-Chr4:5479046 Cma14g01481 Cma-Chr14:11254750 0 dispersed
Cma14g00010 Cma-Chr14:56848 Cma04g01061 Cma-Chr4:5479046 4.43E-31 wgd
Cma15g00170 Cma-Chr15:777070 Cma04g01061 Cma-Chr4:5479046 0 wgd
Cma04g00102 Cma-Chr4:508360 Cma04g01061 Cma-Chr4:5479046 0 wgd
Cma04g01061 Cma-Chr4:5479046 Cma06g00186 Cma-Chr6:954289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68496 PF07714 PK_Tyr_Ser-Thr 1.50E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01061 - - csv:101217762 1576.61