Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01063 ATGTCCTCCGAAGACATGAATGGGCTCAACTCCCACCTCGTCTTCCAAGAGGATGCCATGCCCTTCAATTGCGCCACCACGTCGCAGCGCCGCGTCGCCGACCCAGCTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAACTCTTACCTGTCGACCGCGACCGATTTTTTGCTCACCAGGTCGAAGATTTTCGCCGGAGTGTGTTCGGTCATAGCCGGAATTGGAATGGTAATAAGAGTGCAAGAACTGGTAGTGGCAAAGGGTCGGATGAGGAAGATGATGACGATGAAGATGACGATGGTGAAGATGAAGTCGATGATGGTGAAGATGAAGTCGATGATGGTGATGATGATGATGTTGTTGTTGAGGGGCTTGCTTCTTTGGATGATGTCAATAAGTGCACTAAAACTGCTAACCCTAACAACACCAACAAAGACATAAGCGATCAGAGTAGTGATGGCTTGAAGAATGAGACGAACAAATTGGGGAATGGGAAGCTTAAGCACCATTCATCGTTTGGTGGAACTCTGTTGATCAAGGATGGCTTGGTTGGCTCTTCAGGCTGTAACACAGGAGCTACTCGGAACGACCCAAATGCGGTTACAATAGCAGAACCTGAAAATGCTTATTATTCCCAGTATTTGCAAGGCACTGAGGGATCTACTTCTGGGCAGAAGGATTTAGCCATAGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCGCTTTCAAGCGAACCTGAAGAGTCTCTGAGAGCAATTCTCACCGACCCCGTGACGGGCGTTCTCATGGACGATGCAATGATATTGCCATGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGTTCTCAGTCAGTTTCTGAAGATTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCACCGGGAAGAAGAACTGTTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGATAAAGGTGGTTATGGTGATTCAACTCTCATGGATACTCCACGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTGATTATCAAGGGGAACAAGAGGACGCCGCAGCGTTTTGTGGGACGTGAGGCTGTCGTTACAGCACAATGCTTGAATGGATGGTATGTGGTAAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGATCGCTTGCAAGGGTTCCGAATGATGCAGCATCCAAGACGATAACAAAGAAGGTTGCACCGAATTGGCTTTAG 1305 47.36 MSSEDMNGLNSHLVFQEDAMPFNCATTSQRRVADPAPKTRELCGFMDDKLLPVDRDRFFAHQVEDFRRSVFGHSRNWNGNKSARTGSGKGSDEEDDDDEDDDGEDEVDDGEDEVDDGDDDDVVVEGLASLDDVNKCTKTANPNNTNKDISDQSSDGLKNETNKLGNGKLKHHSSFGGTLLIKDGLVGSSGCNTGATRNDPNAVTIAEPENAYYSQYLQGTEGSTSGQKDLAIENGCGFGRRDVSLSSEPEESLRAILTDPVTGVLMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFHREEELLFYRSPKRRRERFEQDKGGYGDSTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTAQCLNGWYVVKTLDNAESVKLQYRSLARVPNDAASKTITKKVAPNWL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5484863 5488015 + CmaCh04G010630.1 Cma04g01063 292144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01063 434 MobiDBLite consensus disorder prediction 72 120 - -
Cma04g01063 434 MobiDBLite consensus disorder prediction 134 161 - -
Cma04g01063 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Cma04g01063 434 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 38 434 - -
Cma04g01063 434 MobiDBLite consensus disorder prediction 133 169 - -
Cma04g01063 434 MobiDBLite consensus disorder prediction 92 120 - -
Cma04g01063 434 SUPERFAMILY RING/U-box 247 324 - -
Cma04g01063 434 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 38 434 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01063 Cma04g00104 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00022 Cma-Chr4:106106 Cma04g01063 Cma-Chr4:5484863 8.07E-42 dispersed
Cma04g00104 Cma-Chr4:513356 Cma04g01063 Cma-Chr4:5484863 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01063 - - mcha:111015962 681.019