Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01066 ATGGAATTCCCCAATCCCTCTAATCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTGTTCGGGGTTCCTTCCACCGTCGAGCCCATTCCGAGGTCCATTTCCGGATTCCCGACGATCTCGATCTCGTCTCGGACCGTTTCGATGGGCCTTCTTCTGGATTCGGAGATTTGGGCTTCGACGACGATCTCTTATGCACCTTAATGGACAGCGAGAAGATCGGATCCAAAATCGACTATGGGTCTTCGTCTTCGTTCAATCCTGAAGCGCCGGGTGGTGCTGCGGCGGAGAATATCGAAGGGGAGAAAATCTCCCGTCTCAGGCACCGCCATTGCAATTCTGCTGATGAGTCTTGCATTATGGAGTCTATTGAAGCTAAGAAGGCCATGGATCCTGATAAGCTTGCTGAGTTGTGGACAATTGATCCTAAGCGTGCCAAGAGGATTTTAGCGAACAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATCGAACTTGAGAGAAAAGTTCAAAGGCTTAAGACCGAAGCAACAGCTCTTTCTGCACAGCTCACAATGTACCAGAGAGATACGAACGAGCTTTCAACCGAAAACTCAGAGCTCAAACTTCGTTTACAAGCTATGGAACAGCAAGCACGTCTACGCGACGCTCTAAATGAAGCTTTGGAAAAGGAATTCGAACGGTTCAAGATCGCGACCGGAGAAGTAATAACAGCTACAGATTCGTATAACTTCGGTATGCCTCAAGTTTCATTTCCCCAATCTTGCTTTTCACACCAACCACAACCTGGGCAACACAACCTGCCCCAAATTCATCCGTTCCATTCGAGTCTACCGTATCCGAACCAGTCTCTGTTTGTTGCATCCCATCAGCCACATGCCTTGATACAAATTCTTCAACAGGATCCTATTAGCCGATTGCAGGGTCTCGATATCGATATCGATAGCAGAGGCACGGAAATGAAGCCAGAAGGCTCCTCCATATCCGTCAGTGAAAGCAGCAGCACATTTTAA 1023 48.48 MEFPNPSNQMASSSNPTAPVRGSFHRRAHSEVHFRIPDDLDLVSDRFDGPSSGFGDLGFDDDLLCTLMDSEKIGSKIDYGSSSSFNPEAPGGAAAENIEGEKISRLRHRHCNSADESCIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIIELERKVQRLKTEATALSAQLTMYQRDTNELSTENSELKLRLQAMEQQARLRDALNEALEKEFERFKIATGEVITATDSYNFGMPQVSFPQSCFSHQPQPGQHNLPQIHPFHSSLPYPNQSLFVASHQPHALIQILQQDPISRLQGLDIDIDSRGTEMKPEGSSISVSESSSTF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5497333 5500172 + CmaCh04G010660.1 Cma04g01066 292147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01066 340 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 337 - -
Cma04g01066 340 SMART brlzneu 139 203 IPR004827 GO:0003700|GO:0006355
Cma04g01066 340 MobiDBLite consensus disorder prediction 1 20 - -
Cma04g01066 340 CDD bZIP_plant_RF2 144 193 IPR044759 GO:0003700|GO:0006355
Cma04g01066 340 SUPERFAMILY Leucine zipper domain 143 197 IPR046347 GO:0003700|GO:0006355
Cma04g01066 340 MobiDBLite consensus disorder prediction 1 23 - -
Cma04g01066 340 Coils Coil 159 228 - -
Cma04g01066 340 Pfam bZIP transcription factor 143 201 IPR004827 GO:0003700|GO:0006355
Cma04g01066 340 MobiDBLite consensus disorder prediction 319 340 - -
Cma04g01066 340 MobiDBLite consensus disorder prediction 325 340 - -
Cma04g01066 340 Gene3D - 142 194 - -
Cma04g01066 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 204 IPR004827 GO:0003700|GO:0006355
Cma04g01066 340 PANTHER BZIP TRANSCRIPTION FACTOR 18 7 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01066 Cma-Chr4:5497333 Cma20g00307 Cma-Chr20:1509757 2.15E-100 dispersed
Cma04g00106 Cma-Chr4:521220 Cma04g01066 Cma-Chr4:5497333 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34832 PF00170 bZIP_1 1.20E-07 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01066 - - csv:101209388 501.901