Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01066 | ATGGAATTCCCCAATCCCTCTAATCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTGTTCGGGGTTCCTTCCACCGTCGAGCCCATTCCGAGGTCCATTTCCGGATTCCCGACGATCTCGATCTCGTCTCGGACCGTTTCGATGGGCCTTCTTCTGGATTCGGAGATTTGGGCTTCGACGACGATCTCTTATGCACCTTAATGGACAGCGAGAAGATCGGATCCAAAATCGACTATGGGTCTTCGTCTTCGTTCAATCCTGAAGCGCCGGGTGGTGCTGCGGCGGAGAATATCGAAGGGGAGAAAATCTCCCGTCTCAGGCACCGCCATTGCAATTCTGCTGATGAGTCTTGCATTATGGAGTCTATTGAAGCTAAGAAGGCCATGGATCCTGATAAGCTTGCTGAGTTGTGGACAATTGATCCTAAGCGTGCCAAGAGGATTTTAGCGAACAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATCGAACTTGAGAGAAAAGTTCAAAGGCTTAAGACCGAAGCAACAGCTCTTTCTGCACAGCTCACAATGTACCAGAGAGATACGAACGAGCTTTCAACCGAAAACTCAGAGCTCAAACTTCGTTTACAAGCTATGGAACAGCAAGCACGTCTACGCGACGCTCTAAATGAAGCTTTGGAAAAGGAATTCGAACGGTTCAAGATCGCGACCGGAGAAGTAATAACAGCTACAGATTCGTATAACTTCGGTATGCCTCAAGTTTCATTTCCCCAATCTTGCTTTTCACACCAACCACAACCTGGGCAACACAACCTGCCCCAAATTCATCCGTTCCATTCGAGTCTACCGTATCCGAACCAGTCTCTGTTTGTTGCATCCCATCAGCCACATGCCTTGATACAAATTCTTCAACAGGATCCTATTAGCCGATTGCAGGGTCTCGATATCGATATCGATAGCAGAGGCACGGAAATGAAGCCAGAAGGCTCCTCCATATCCGTCAGTGAAAGCAGCAGCACATTTTAA | 1023 | 48.48 | MEFPNPSNQMASSSNPTAPVRGSFHRRAHSEVHFRIPDDLDLVSDRFDGPSSGFGDLGFDDDLLCTLMDSEKIGSKIDYGSSSSFNPEAPGGAAAENIEGEKISRLRHRHCNSADESCIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIIELERKVQRLKTEATALSAQLTMYQRDTNELSTENSELKLRLQAMEQQARLRDALNEALEKEFERFKIATGEVITATDSYNFGMPQVSFPQSCFSHQPQPGQHNLPQIHPFHSSLPYPNQSLFVASHQPHALIQILQQDPISRLQGLDIDIDSRGTEMKPEGSSISVSESSSTF | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5497333 | 5500172 | + | CmaCh04G010660.1 | Cma04g01066 | 292147 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01066 | 340 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 337 | - | - | |
Cma04g01066 | 340 | SMART | brlzneu | 139 | 203 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g01066 | 340 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma04g01066 | 340 | CDD | bZIP_plant_RF2 | 144 | 193 | IPR044759 | GO:0003700|GO:0006355 | |
Cma04g01066 | 340 | SUPERFAMILY | Leucine zipper domain | 143 | 197 | IPR046347 | GO:0003700|GO:0006355 | |
Cma04g01066 | 340 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma04g01066 | 340 | Coils | Coil | 159 | 228 | - | - | |
Cma04g01066 | 340 | Pfam | bZIP transcription factor | 143 | 201 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g01066 | 340 | MobiDBLite | consensus disorder prediction | 319 | 340 | - | - | |
Cma04g01066 | 340 | MobiDBLite | consensus disorder prediction | 325 | 340 | - | - | |
Cma04g01066 | 340 | Gene3D | - | 142 | 194 | - | - | |
Cma04g01066 | 340 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 141 | 204 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g01066 | 340 | PANTHER | BZIP TRANSCRIPTION FACTOR 18 | 7 | 337 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01066 | Cma-Chr4:5497333 | Cma20g00307 | Cma-Chr20:1509757 | 2.15E-100 | dispersed | |
Cma04g00106 | Cma-Chr4:521220 | Cma04g01066 | Cma-Chr4:5497333 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34832 | PF00170 | bZIP_1 | 1.20E-07 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01066 | - | - | csv:101209388 | 501.901 |