Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01067 ATGGCCTTTTACTCGCCATTTTCCCTCCTTCCTCTCTTCTTCCTCTTCCTCCGCTCCACCTTTGCCGACTACGGCGGCTGGCAGAGCGGCCATGCCACCTTTTACGGTGGCGGTGACGCGTCTGGTACTATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTATGGCACCAACACGGTGGCGCTAAGCACGGCGCTGTTCAACAACGGCCTCAGCTGTGGGGCTTGCTTCGAAATGACTTGCACAAATGATCCCAAATGGTGCCTGCCCGGAACCATTAGGGTCACCGCCACCAACTTCTGCCCCCCCAACTTTGCCCTCCCCAACAACAACGGCGGCTGGTGCAACCCTCCTCTCCAGCACTTCGATATGGCTGAGCCTGCCTTCCTTCAGATCGCTCAATACCGCGCCGGAATTGTCCCCGTCTCCTTTCGGAGAGTGCCATGCATGAAGAAAGGTGGGGTGAGGTTCACAATTAACGGCCACTCCTACTTTAACCTTGTTTTGATCACGAACGTGGGTGGCGCTGGTGACGTCCACGCCGTGTCGATAAAGGGATCTCGAACTGGATGGCAAGCGATGTCTAGAAATTGGGGTCAAAACTGGCAAAGCAACAACTATCTCAACGGTCAAGGCCTCTCCTTTCAGGTCACCCTCAGCGATGGCCGCACTCTCACGGCCTATAATCTCGTCCCTTCCAATTGGCAGTTTGGTCGGACCTATGAAGGCCCTCAATTTTAA 750 55.33 MAFYSPFSLLPLFFLFLRSTFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLVPSNWQFGRTYEGPQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5503188 5505009 + CmaCh04G010670.1 Cma04g01067 292148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01067 249 PANTHER EXPANSIN-A15 8 249 IPR002963 GO:0009664
Cma04g01067 249 Gene3D - 17 153 IPR036908 -
Cma04g01067 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cma04g01067 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cma04g01067 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cma04g01067 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Cma04g01067 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Cma04g01067 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Cma04g01067 249 SMART dpbb_1 62 147 IPR007112 -
Cma04g01067 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Cma04g01067 249 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Cma04g01067 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Cma04g01067 249 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Cma04g01067 249 Pfam Lytic transglycolase 62 147 IPR009009 -
Cma04g01067 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Cma04g01067 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cma04g01067 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cma04g01067 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cma04g01067 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Cma04g01067 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Cma04g01067 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Cma04g01067 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Cma04g01067 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Cma04g01067 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Cma04g01067 249 PANTHER EXPANSIN 8 249 - -
Cma04g01067 249 Gene3D - 157 249 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01067 Cma-Chr4:5503188 Cma04g01668 Cma-Chr4:8389926 6.13E-142 dispersed
Cma15g00164 Cma-Chr15:757817 Cma04g01067 Cma-Chr4:5503188 6.39E-152 wgd
Cma04g00107 Cma-Chr4:526955 Cma04g01067 Cma-Chr4:5503188 4.54E-166 wgd
Cma04g01067 Cma-Chr4:5503188 Cma04g02865 Cma-Chr4:19076901 3.31E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01067 - K20628 csv:101209633 494.197