Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g01074 | ATGTCCAAAGAAAGAGAGAGATTCGAAGAGATAGCGAAGAAGATAAAGAGAGAAACCGATGTATCATCAAATATTCCTCCACAACAAATCATGGGGAGACGCCATTCCTTGCAGGCTCCTCCAGGGATACTCAACACCATTACTCCATGCGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCGCCCCCTACTTCTCGCCTCACGAGCCTCATAAATTCGCCTCGGTTCACAAGGTTTTCGGTGCTAGCAATGTCTCGAAGATGCTCATGGAAGTTTCCGAGAACCATAGAGCAGATGCTGCGAACAGCTTAGTTTACGAAGCGAATGTGAGGCTTCGAGATCCTGTTTATGGGTGCATGGGCGCCATTTCGTCCCTACAACACCAAATCCAAGCCTTACAAATTGAGTTAAACGCGGTAAGAGCTGAGATCTTAAGACACAAATTTAGAGAAGCTAGTAATATGATTCACTCTTCTCCTCAACCACAACAACAACAACATGTGTCTTTTCTTTCATCTTCGGCCGAGGTCGTTTCGGTTGCCGTTCCACCACCGCCACCGTCTCTACCGCACAACGCTTCTTCCTCTTCCTCCCCCTTGTACAACCGTCCCACAGTGGCAACGGATTATAATACTATTTCAAGCAACGAAAATGTTACCTACTTTGTTAGTACTACAAGTACCGATCATCAATTGAATTCTTAG | 720 | 45.97 | MSKERERFEEIAKKIKRETDVSSNIPPQQIMGRRHSLQAPPGILNTITPCAACKLLRRRCAQECPFAPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENHRADAANSLVYEANVRLRDPVYGCMGAISSLQHQIQALQIELNAVRAEILRHKFREASNMIHSSPQPQQQQHVSFLSSSAEVVSVAVPPPPPSLPHNASSSSSPLYNRPTVATDYNTISSNENVTYFVSTTSTDHQLNS | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 5545442 | 5546708 | - | CmaCh04G010740.1 | Cma04g01074 | 292155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g01074 | 239 | PANTHER | LOB DOMAIN PROTEIN | 34 | 227 | - | - | |
| Cma04g01074 | 239 | Pfam | Lateral organ boundaries (LOB) domain | 49 | 146 | IPR004883 | - | |
| Cma04g01074 | 239 | ProSiteProfiles | LOB domain profile. | 48 | 149 | IPR004883 | - | |
| Cma04g01074 | 239 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 34 | 227 | - | - | |
| Cma04g01074 | 239 | Coils | Coil | 128 | 148 | - | - | |
| Cma04g01074 | 239 | MobiDBLite | consensus disorder prediction | 186 | 206 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g01074 | Cma15g00157 | CCT | |
| Cma04g00113 | Cma04g01074 | ECH | |
| Cma04g01074 | Cma15g00157 | ECH | |
| Cma04g01074 | Cma04g00113 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01074 | Cma-Chr4:5545442 | Cma02g00725 | Cma-Chr2:4403586 | 2.08E-49 | dispersed | |
| Cma15g00157 | Cma-Chr15:729704 | Cma04g01074 | Cma-Chr4:5545442 | 6.15E-79 | wgd | |
| Cma04g00113 | Cma-Chr4:551388 | Cma04g01074 | Cma-Chr4:5545442 | 8.53E-84 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34833 | PF03195 | LOB | 5.30E-40 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g01074 | - | - | csv:101219425 | 367.081 |