Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01074 ATGTCCAAAGAAAGAGAGAGATTCGAAGAGATAGCGAAGAAGATAAAGAGAGAAACCGATGTATCATCAAATATTCCTCCACAACAAATCATGGGGAGACGCCATTCCTTGCAGGCTCCTCCAGGGATACTCAACACCATTACTCCATGCGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCGCCCCCTACTTCTCGCCTCACGAGCCTCATAAATTCGCCTCGGTTCACAAGGTTTTCGGTGCTAGCAATGTCTCGAAGATGCTCATGGAAGTTTCCGAGAACCATAGAGCAGATGCTGCGAACAGCTTAGTTTACGAAGCGAATGTGAGGCTTCGAGATCCTGTTTATGGGTGCATGGGCGCCATTTCGTCCCTACAACACCAAATCCAAGCCTTACAAATTGAGTTAAACGCGGTAAGAGCTGAGATCTTAAGACACAAATTTAGAGAAGCTAGTAATATGATTCACTCTTCTCCTCAACCACAACAACAACAACATGTGTCTTTTCTTTCATCTTCGGCCGAGGTCGTTTCGGTTGCCGTTCCACCACCGCCACCGTCTCTACCGCACAACGCTTCTTCCTCTTCCTCCCCCTTGTACAACCGTCCCACAGTGGCAACGGATTATAATACTATTTCAAGCAACGAAAATGTTACCTACTTTGTTAGTACTACAAGTACCGATCATCAATTGAATTCTTAG 720 45.97 MSKERERFEEIAKKIKRETDVSSNIPPQQIMGRRHSLQAPPGILNTITPCAACKLLRRRCAQECPFAPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENHRADAANSLVYEANVRLRDPVYGCMGAISSLQHQIQALQIELNAVRAEILRHKFREASNMIHSSPQPQQQQHVSFLSSSAEVVSVAVPPPPPSLPHNASSSSSPLYNRPTVATDYNTISSNENVTYFVSTTSTDHQLNS 239
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 5545442 5546708 - CmaCh04G010740.1 Cma04g01074 292155
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01074 239 PANTHER LOB DOMAIN PROTEIN 34 227 - -
Cma04g01074 239 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Cma04g01074 239 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Cma04g01074 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 227 - -
Cma04g01074 239 Coils Coil 128 148 - -
Cma04g01074 239 MobiDBLite consensus disorder prediction 186 206 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01074 Cma-Chr4:5545442 Cma02g00725 Cma-Chr2:4403586 2.08E-49 dispersed
Cma15g00157 Cma-Chr15:729704 Cma04g01074 Cma-Chr4:5545442 6.15E-79 wgd
Cma04g00113 Cma-Chr4:551388 Cma04g01074 Cma-Chr4:5545442 8.53E-84 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34833 PF03195 LOB 5.30E-40 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01074 - - csv:101219425 367.081