Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01077 ATGTCGTGCATTCACAACACCCCATTACCTTGTTTCTCTGCTTCCTCTTCTTCTTTCCCCAGAAGAAATCGATGCGCTTCTTTCAAGTCTCGAATCCACTGTACTCTTGGAGGAACTGTAGCAGAACCAAAATCTACCACTTCTGCAGAACCGTTGTTGCTTAATGCTGTTCGTGGTGAGGATGTCGAAAGACCCCCAGTTTGGTTGATGAGGCAAGCAGGGAGATTATATTGTTCTGTTGTGGCGGTCGGTTTCTCAATTGAAATTTTGTTTGCTAGAAAAGACTATCTTTTGCACTCTGTGGTGGATTTGGTGGGATTTGCAGCCCATAAGCCGGATAGTTATAGTACTCATAAAGTGAGTTACCAAGTCATTTGTGAAAAATACCCTTCATTTCGTCAAAGGTCCGAAAATACGGATCTTGTTGTGGAAATTTCGCTTCAGCCCTGGAAAGTCTTTAAGCCTGATGGGGTGATCTTATTCTCAGACATTCTCACTCCGCTATCCGGGATGAATATTCCCTTCGACATCGTCAAAGGTAAGGGTCCGATCATCGCTAACCCTATAAGTGAAGCTTCTCAAGTGAACGAAGTGAGGGAATTTGTCCCTGAAGAGAATGTTCCATATGTTGGGGAAGCTTTGACGATTCTGCGAAAAGAGGTTGACAACAAAGCAGCAGTTCTTGGTTTCGTTGGGGCTCCTTTCACCCTTGCATCATACGTGGTCGAAGGTGGTTCGTCGAAGCACTTTTCAAAAATAAAAAGGCTTGCTTTCTCTCAGCCAAAGGTTCTTCATGCATTGCTCCAGAAGTTTACAAGCTCAATGGCTAGGTACGTTCAATACCAAGCAGACAATGGAGCGCAAGCCGTTCAAATCTTTGATTCGTGGGCGACAGAGCTCAGCCCAGTGGACTTCGAAGAATTCAGTCTCCCATACTTGAAGCAGATTGTGGAGTCTGTGAAGAAAACACATCCAGACCTTCCACTGATTCTGTACGCCAGTGGGTCTGGGGGCTTACTTGAAAGGCTGGCTTCAACTGGTGTCGACGTAGTTAGCTTAGATTGGACGGTCGACATGGCTGAAGGTAGGAGGCGATTAGGAGCAGACGTAGCAGTGCAGGGTAATGTCGACCCCGGCGTTCTGTTTGGTTCCAAGGAGTTTATCACCAAAAGAATAAATGATACCGTGAAGAAGGCAGGTAAAGGGAAGCACATATTGAATCTAGGCCATGGCATTGTTGTGGGTACACCTGAGGAAAATGTAGCTCACTTCTTTGAGGTTGCTAAAGGAATTAGGTCGGCGGATTTGCTCCTCAAAACCCACCAGATTTCTAAATTCTACACAATTTTGATTACTTCGATCGTTAACGAGAGGGAAGAACAAAGGGAAAGAATCAGTGCATCTCAGAAGAAAATGGGAGCTTCTAGCCTCGCTTGTTTTTCATCGCTATTTGCAGTTTTTCCATCTCATAATAATGCGCACAACAAATCTTTACCATTTTGTTCAAATCCTTCAAAACCCCTCTTCCGATTGAACAAGATCCGCTGCGGACTGCCTGAGAGTGGAATTCGGCAAAACCCCTCAAGTTCCAGAACTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAACCCATATGAGTATCACCATGAACTGGGTATGAACTATACTTTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCGGAAGATATCGATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGATAAGGATGTCGAGTACTGGGGAATCGACTTACAGTCGGTTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCAAAGGATTTTGATCCAGACTCCCTGAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGAAAAGTTTACGTGCATTGCACTGCTGGACTGGGCAGGGCCCCTGCCGTTGCAATAGCATACCTGTACTGGTTTTGTGGAATGAATGCAACATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCCATTCGCGGAGCCACATACGATCTATCGAAAAATGATCCAGGGAAGGAGCCATTCGAGAGCCTTCCAGATAACGCATTCGAGGATATTGCAGATTGGGAGAGAAACTTGATTCAGGATCGGGTGCGTGCAATACGTGCGGGTTCAACGTCGTTCGGTTTTTACCAGGATGATGGATTGGACAATATAGAATGA 2304 44.88 MSCIHNTPLPCFSASSSSFPRRNRCASFKSRIHCTLGGTVAEPKSTTSAEPLLLNAVRGEDVERPPVWLMRQAGRLYCSVVAVGFSIEILFARKDYLLHSVVDLVGFAAHKPDSYSTHKVSYQVICEKYPSFRQRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEASQVNEVREFVPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLQKFTSSMARYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVESVKKTHPDLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADVAVQGNVDPGVLFGSKEFITKRINDTVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAKGIRSADLLLKTHQISKFYTILITSIVNEREEQRERISASQKKMGASSLACFSSLFAVFPSHNNAHNKSLPFCSNPSKPLFRLNKIRCGLPESGIRQNPSSSRTSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTLIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSVIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNATYEALTSKRPCGPSKKAIRGATYDLSKNDPGKEPFESLPDNAFEDIADWERNLIQDRVRAIRAGSTSFGFYQDDGLDNIE 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5552010 5558781 + CmaCh04G010770.1 Cma04g01077 292158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01077 767 Pfam Dual specificity phosphatase, catalytic domain 586 697 IPR000340 GO:0008138|GO:0016311
Cma04g01077 767 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 25 432 - -
Cma04g01077 767 Pfam Uroporphyrinogen decarboxylase (URO-D) 52 82 IPR000257 GO:0004853|GO:0006779
Cma04g01077 767 Pfam Uroporphyrinogen decarboxylase (URO-D) 129 429 IPR000257 GO:0004853|GO:0006779
Cma04g01077 767 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 432 IPR006361 GO:0004853|GO:0006779
Cma04g01077 767 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 556 696 IPR029021 -
Cma04g01077 767 TIGRFAM hemE: uroporphyrinogen decarboxylase 121 429 IPR006361 GO:0004853|GO:0006779
Cma04g01077 767 CDD URO-D 54 429 IPR006361 GO:0004853|GO:0006779
Cma04g01077 767 SUPERFAMILY UROD/MetE-like 52 432 IPR038071 -
Cma04g01077 767 Gene3D Protein tyrosine phosphatase superfamily 546 751 IPR029021 -
Cma04g01077 767 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 25 432 - -
Cma04g01077 767 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 66 75 IPR000257 GO:0004853|GO:0006779
Cma04g01077 767 Gene3D - 39 432 IPR038071 -
Cma04g01077 767 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 228 244 IPR000257 GO:0004853|GO:0006779
Cma04g01077 767 CDD DSP_laforin-like 562 707 IPR045204 GO:0019203|GO:0046838
Cma04g01077 767 ProSiteProfiles Dual specificity protein phosphatase domain profile. 563 721 IPR020422 GO:0006470|GO:0008138
Cma04g01077 767 SMART dsp_5 563 703 IPR020422 GO:0006470|GO:0008138
Cma04g01077 767 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 640 679 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01077 Cma-Chr4:5552010 Cma16g00441 Cma-Chr16:2199104 1.41E-127 dispersed
Cma04g00115 Cma-Chr4:558088 Cma04g01077 Cma-Chr4:5552010 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01077 K01599 - csv:101212245 724.161