Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01077 ATGTCGTGCATTCACAACACCCCATTACCTTGTTTCTCTGCTTCCTCTTCTTCTTTCCCCAGAAGAAATCGATGCGCTTCTTTCAAGTCTCGAATCCACTGTACTCTTGGAGGAACTGTAGCAGAACCAAAATCTACCACTTCTGCAGAACCGTTGTTGCTTAATGCTGTTCGTGGTGAGGATGTCGAAAGACCCCCAGTTTGGTTGATGAGGCAAGCAGGGAGATTATATTGTTCTGTTGTGGCGGTCGGTTTCTCAATTGAAATTTTGTTTGCTAGAAAAGACTATCTTTTGCACTCTGTGGTGGATTTGGTGGGATTTGCAGCCCATAAGCCGGATAGTTATAGTACTCATAAAGTGAGTTACCAAGTCATTTGTGAAAAATACCCTTCATTTCGTCAAAGGTCCGAAAATACGGATCTTGTTGTGGAAATTTCGCTTCAGCCCTGGAAAGTCTTTAAGCCTGATGGGGTGATCTTATTCTCAGACATTCTCACTCCGCTATCCGGGATGAATATTCCCTTCGACATCGTCAAAGGTAAGGGTCCGATCATCGCTAACCCTATAAGTGAAGCTTCTCAAGTGAACGAAGTGAGGGAATTTGTCCCTGAAGAGAATGTTCCATATGTTGGGGAAGCTTTGACGATTCTGCGAAAAGAGGTTGACAACAAAGCAGCAGTTCTTGGTTTCGTTGGGGCTCCTTTCACCCTTGCATCATACGTGGTCGAAGGTGGTTCGTCGAAGCACTTTTCAAAAATAAAAAGGCTTGCTTTCTCTCAGCCAAAGGTTCTTCATGCATTGCTCCAGAAGTTTACAAGCTCAATGGCTAGGTACGTTCAATACCAAGCAGACAATGGAGCGCAAGCCGTTCAAATCTTTGATTCGTGGGCGACAGAGCTCAGCCCAGTGGACTTCGAAGAATTCAGTCTCCCATACTTGAAGCAGATTGTGGAGTCTGTGAAGAAAACACATCCAGACCTTCCACTGATTCTGTACGCCAGTGGGTCTGGGGGCTTACTTGAAAGGCTGGCTTCAACTGGTGTCGACGTAGTTAGCTTAGATTGGACGGTCGACATGGCTGAAGGTAGGAGGCGATTAGGAGCAGACGTAGCAGTGCAGGGTAATGTCGACCCCGGCGTTCTGTTTGGTTCCAAGGAGTTTATCACCAAAAGAATAAATGATACCGTGAAGAAGGCAGGTAAAGGGAAGCACATATTGAATCTAGGCCATGGCATTGTTGTGGGTACACCTGAGGAAAATGTAGCTCACTTCTTTGAGGTTGCTAAAGGAATTAGGTCGGCGGATTTGCTCCTCAAAACCCACCAGATTTCTAAATTCTACACAATTTTGATTACTTCGATCGTTAACGAGAGGGAAGAACAAAGGGAAAGAATCAGTGCATCTCAGAAGAAAATGGGAGCTTCTAGCCTCGCTTGTTTTTCATCGCTATTTGCAGTTTTTCCATCTCATAATAATGCGCACAACAAATCTTTACCATTTTGTTCAAATCCTTCAAAACCCCTCTTCCGATTGAACAAGATCCGCTGCGGACTGCCTGAGAGTGGAATTCGGCAAAACCCCTCAAGTTCCAGAACTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAACCCATATGAGTATCACCATGAACTGGGTATGAACTATACTTTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCGGAAGATATCGATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGATAAGGATGTCGAGTACTGGGGAATCGACTTACAGTCGGTTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCAAAGGATTTTGATCCAGACTCCCTGAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGAAAAGTTTACGTGCATTGCACTGCTGGACTGGGCAGGGCCCCTGCCGTTGCAATAGCATACCTGTACTGGTTTTGTGGAATGAATGCAACATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCCATTCGCGGAGCCACATACGATCTATCGAAAAATGATCCAGGGAAGGAGCCATTCGAGAGCCTTCCAGATAACGCATTCGAGGATATTGCAGATTGGGAGAGAAACTTGATTCAGGATCGGGTGCGTGCAATACGTGCGGGTTCAACGTCGTTCGGTTTTTACCAGGATGATGGATTGGACAATATAGAATGA 2304 44.88 MSCIHNTPLPCFSASSSSFPRRNRCASFKSRIHCTLGGTVAEPKSTTSAEPLLLNAVRGEDVERPPVWLMRQAGRLYCSVVAVGFSIEILFARKDYLLHSVVDLVGFAAHKPDSYSTHKVSYQVICEKYPSFRQRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEASQVNEVREFVPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLQKFTSSMARYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVESVKKTHPDLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADVAVQGNVDPGVLFGSKEFITKRINDTVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAKGIRSADLLLKTHQISKFYTILITSIVNEREEQRERISASQKKMGASSLACFSSLFAVFPSHNNAHNKSLPFCSNPSKPLFRLNKIRCGLPESGIRQNPSSSRTSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTLIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSVIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNATYEALTSKRPCGPSKKAIRGATYDLSKNDPGKEPFESLPDNAFEDIADWERNLIQDRVRAIRAGSTSFGFYQDDGLDNIE 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5552010 5558781 + CmaCh04G010770.1 Cma04g01077 292158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01077 767 Pfam Dual specificity phosphatase, catalytic domain 586 697 IPR000340 GO:0008138|GO:0016311
Cma04g01077 767 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 25 432 - -
Cma04g01077 767 Pfam Uroporphyrinogen decarboxylase (URO-D) 52 82 IPR000257 GO:0004853|GO:0006779
Cma04g01077 767 Pfam Uroporphyrinogen decarboxylase (URO-D) 129 429 IPR000257 GO:0004853|GO:0006779
Cma04g01077 767 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 432 IPR006361 GO:0004853|GO:0006779
Cma04g01077 767 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 556 696 IPR029021 -
Cma04g01077 767 TIGRFAM hemE: uroporphyrinogen decarboxylase 121 429 IPR006361 GO:0004853|GO:0006779
Cma04g01077 767 CDD URO-D 54 429 IPR006361 GO:0004853|GO:0006779
Cma04g01077 767 SUPERFAMILY UROD/MetE-like 52 432 IPR038071 -
Cma04g01077 767 Gene3D Protein tyrosine phosphatase superfamily 546 751 IPR029021 -
Cma04g01077 767 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 25 432 - -
Cma04g01077 767 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 66 75 IPR000257 GO:0004853|GO:0006779
Cma04g01077 767 Gene3D - 39 432 IPR038071 -
Cma04g01077 767 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 228 244 IPR000257 GO:0004853|GO:0006779
Cma04g01077 767 CDD DSP_laforin-like 562 707 IPR045204 GO:0019203|GO:0046838
Cma04g01077 767 ProSiteProfiles Dual specificity protein phosphatase domain profile. 563 721 IPR020422 GO:0006470|GO:0008138
Cma04g01077 767 SMART dsp_5 563 703 IPR020422 GO:0006470|GO:0008138
Cma04g01077 767 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 640 679 IPR000387 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01077 K01599 hemE, UROD; uroporphyrinogen decarboxylase [EC:4.1.1.37] - csv:101212245 724.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01077 Cma-Chr4:5552010 Cma16g00441 Cma-Chr16:2199104 1.41E-127 dispersed
Cma04g00115 Cma-Chr4:558088 Cma04g01077 Cma-Chr4:5552010 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma07g00685 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 3.1e-187 652.5
Cma11g01730 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.9 8.7e-182 634.4
Cma19g00587 CST 42 466 Protein tyrosine phosphatase (PTP) family AT3G50110 67.5 8.1e-172 601.3
Cma11g01149 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 66.0 2.2e-157 552.7
Cma14g00570 . 1 333 Protein tyrosine phosphatase (PTP) family AT5G39400 53.9 5.2e-111 398.7
Cma15g00486 . 672 1456 Protein tyrosine phosphatase (PTP) family AT3G10550 62.1 3.2e-293 1005.0
Cma15g00486 . 672 1457 Protein tyrosine phosphatase (PTP) family AT5G04540 59.1 6.5e-278 954.1
Cma10g00473 . 1 1167 Protein tyrosine phosphatase (PTP) family AT5G58160 52.6 0.0e+00 1103.2
Cma11g00467 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 0.0e+00 1088.9
Cma09g00412 CCT 1 1315 Protein tyrosine phosphatase (PTP) family AT5G58160 51.4 1.9e-300 1029.6
Cma01g01662 CCT 31 1404 Protein tyrosine phosphatase (PTP) family AT5G58160 50.6 2.0e-286 983.0
Cma09g01150 . 80 370 Protein tyrosine phosphatase (PTP) family AT1G71860 64.8 2.8e-110 396.0
Cma10g00020 . 14 662 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 3.3e-230 795.8
Cma10g00021 . 8 278 Protein tyrosine phosphatase (PTP) family AT5G23720 59.4 2.9e-77 287.7
Cma08g01167 . 77 215 Protein tyrosine phosphatase (PTP) family AT3G06110 55.0 8.8e-41 164.1
Cma11g01941 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 1.6e-72 269.6
Cma19g01054 . 1 185 Protein tyrosine phosphatase (PTP) family AT2G04550 68.6 5.8e-67 251.1
Cma04g01404 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.8 8.3e-116 414.1
Cma18g00926 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 67.3 1.4e-110 396.7
Cma04g01077 . 525 750 Protein tyrosine phosphatase (PTP) family AT3G10940 76.4 6.5e-105 377.9
Cma11g01431 . 144 590 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 1.2e-198 689.9
Cma02g00065 CST 9 215 Protein tyrosine phosphatase (PTP) family AT2G32960 57.7 2.1e-73 273.1
Cma20g00235 CST 43 209 Protein tyrosine phosphatase (PTP) family AT2G32960 65.3 8.7e-72 267.7
Cma11g01936 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 61.9 5.5e-66 248.4
Cma19g01048 . 186 380 Protein tyrosine phosphatase (PTP) family AT2G32960 60.4 4.3e-63 238.8
Cma11g00940 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.5 4.1e-53 205.7
Cma10g00831 . 13 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.5 2.0e-52 203.4
Cma06g00800 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.5e-100 363.6
Cma16g01120 . 98 430 Protein tyrosine phosphatase (PTP) family AT2G35680 53.5 1.5e-95 347.1
Cma05g01379 CST 20 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.4 7.4e-79 291.6
Cma12g01280 CST 17 205 Protein tyrosine phosphatase (PTP) family AT2G35680 67.2 2.1e-73 273.5
Cma16g01120 . 134 309 Protein tyrosine phosphatase (PTP) family AT5G56610 51.1 7.3e-44 174.5
Cma06g00800 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.3 4.7e-43 171.8
Cma12g01280 CST 27 206 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.2e-42 168.3
Cma20g00235 CST 40 209 Protein tyrosine phosphatase (PTP) family AT4G03960 76.5 2.6e-76 282.3
Cma02g00065 CST 18 215 Protein tyrosine phosphatase (PTP) family AT4G03960 68.7 7.6e-76 280.8
Cma11g01936 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.8 9.7e-71 263.8
Cma19g01048 . 183 380 Protein tyrosine phosphatase (PTP) family AT4G03960 58.1 3.8e-59 225.3
Cma11g00940 . 5 170 Protein tyrosine phosphatase (PTP) family AT4G03960 58.4 6.1e-57 218.0
Cma10g00831 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 60.9 2.0e-55 213.0
Cma11g00940 . 1 197 Protein tyrosine phosphatase (PTP) family AT3G02800 71.7 1.6e-81 299.7
Cma10g00831 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.4 3.2e-77 285.4
Cma02g00065 CST 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 62.9 6.2e-57 218.0
Cma20g00235 CST 37 198 Protein tyrosine phosphatase (PTP) family AT3G02800 61.1 4.5e-55 211.8
Cma11g01936 . 42 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.6 1.5e-50 196.8
Cma04g01207 CST 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 1.1e-61 235.7
Cma04g00232 CST 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 4.4e-58 223.8
Cma11g01149 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 66.0 2.2e-157 552.7
Cma14g00570 . 1 333 Protein tyrosine phosphatase (PTP) family AT5G39400 53.9 5.2e-111 398.7
Cma11g01730 CST 8 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.2 5.4e-221 764.6
Cma07g00685 . 31 604 Protein tyrosine phosphatase (PTP) family AT3G19420 63.2 1.2e-201 700.3
Cma19g00587 CST 40 479 Protein tyrosine phosphatase (PTP) family AT3G19420 73.7 9.8e-199 690.6
Cma07g00685 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 3.1e-187 652.5
Cma11g01730 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.9 8.7e-182 634.4
Cma19g00587 CST 42 466 Protein tyrosine phosphatase (PTP) family AT3G50110 67.5 8.1e-172 601.3
Cma10g00473 . 1 1167 Protein tyrosine phosphatase (PTP) family AT5G58160 52.6 0.0e+00 1103.2
Cma11g00467 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 0.0e+00 1088.9
Cma09g00412 CCT 1 1315 Protein tyrosine phosphatase (PTP) family AT5G58160 51.4 1.9e-300 1029.6
Cma01g01662 CCT 31 1404 Protein tyrosine phosphatase (PTP) family AT5G58160 50.6 2.0e-286 983.0
Cma15g00486 . 672 1456 Protein tyrosine phosphatase (PTP) family AT3G10550 62.1 3.2e-293 1005.0
Cma15g00486 . 672 1457 Protein tyrosine phosphatase (PTP) family AT5G04540 59.1 6.5e-278 954.1
Cma02g01340 . 64 247 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.3e-70 263.8
Cma16g01148 . 74 370 Protein tyrosine phosphatase (PTP) family AT2G35320 62.6 1.5e-110 396.7
Cma03g00375 . 1 666 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 2.8e-271 931.8
Cma03g00375 . 1 666 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 8.3e-252 867.1
Cma03g00375 . 60 666 Protein tyrosine phosphatase (PTP) family AT5G28210 55.4 5.6e-181 631.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006238 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01077 Cma_Chr04 FPKM 12.896024 12.696261 30.086267 31.147198 144.667007 143.57341 145.634827 32.70541 30.205391 30.465559