Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01077 | ATGTCGTGCATTCACAACACCCCATTACCTTGTTTCTCTGCTTCCTCTTCTTCTTTCCCCAGAAGAAATCGATGCGCTTCTTTCAAGTCTCGAATCCACTGTACTCTTGGAGGAACTGTAGCAGAACCAAAATCTACCACTTCTGCAGAACCGTTGTTGCTTAATGCTGTTCGTGGTGAGGATGTCGAAAGACCCCCAGTTTGGTTGATGAGGCAAGCAGGGAGATTATATTGTTCTGTTGTGGCGGTCGGTTTCTCAATTGAAATTTTGTTTGCTAGAAAAGACTATCTTTTGCACTCTGTGGTGGATTTGGTGGGATTTGCAGCCCATAAGCCGGATAGTTATAGTACTCATAAAGTGAGTTACCAAGTCATTTGTGAAAAATACCCTTCATTTCGTCAAAGGTCCGAAAATACGGATCTTGTTGTGGAAATTTCGCTTCAGCCCTGGAAAGTCTTTAAGCCTGATGGGGTGATCTTATTCTCAGACATTCTCACTCCGCTATCCGGGATGAATATTCCCTTCGACATCGTCAAAGGTAAGGGTCCGATCATCGCTAACCCTATAAGTGAAGCTTCTCAAGTGAACGAAGTGAGGGAATTTGTCCCTGAAGAGAATGTTCCATATGTTGGGGAAGCTTTGACGATTCTGCGAAAAGAGGTTGACAACAAAGCAGCAGTTCTTGGTTTCGTTGGGGCTCCTTTCACCCTTGCATCATACGTGGTCGAAGGTGGTTCGTCGAAGCACTTTTCAAAAATAAAAAGGCTTGCTTTCTCTCAGCCAAAGGTTCTTCATGCATTGCTCCAGAAGTTTACAAGCTCAATGGCTAGGTACGTTCAATACCAAGCAGACAATGGAGCGCAAGCCGTTCAAATCTTTGATTCGTGGGCGACAGAGCTCAGCCCAGTGGACTTCGAAGAATTCAGTCTCCCATACTTGAAGCAGATTGTGGAGTCTGTGAAGAAAACACATCCAGACCTTCCACTGATTCTGTACGCCAGTGGGTCTGGGGGCTTACTTGAAAGGCTGGCTTCAACTGGTGTCGACGTAGTTAGCTTAGATTGGACGGTCGACATGGCTGAAGGTAGGAGGCGATTAGGAGCAGACGTAGCAGTGCAGGGTAATGTCGACCCCGGCGTTCTGTTTGGTTCCAAGGAGTTTATCACCAAAAGAATAAATGATACCGTGAAGAAGGCAGGTAAAGGGAAGCACATATTGAATCTAGGCCATGGCATTGTTGTGGGTACACCTGAGGAAAATGTAGCTCACTTCTTTGAGGTTGCTAAAGGAATTAGGTCGGCGGATTTGCTCCTCAAAACCCACCAGATTTCTAAATTCTACACAATTTTGATTACTTCGATCGTTAACGAGAGGGAAGAACAAAGGGAAAGAATCAGTGCATCTCAGAAGAAAATGGGAGCTTCTAGCCTCGCTTGTTTTTCATCGCTATTTGCAGTTTTTCCATCTCATAATAATGCGCACAACAAATCTTTACCATTTTGTTCAAATCCTTCAAAACCCCTCTTCCGATTGAACAAGATCCGCTGCGGACTGCCTGAGAGTGGAATTCGGCAAAACCCCTCAAGTTCCAGAACTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAACCCATATGAGTATCACCATGAACTGGGTATGAACTATACTTTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCGGAAGATATCGATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGATAAGGATGTCGAGTACTGGGGAATCGACTTACAGTCGGTTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCAAAGGATTTTGATCCAGACTCCCTGAGAAATGGATTGCCCAAAGCTGTTTCCTTGTTAGAATGGGCGATTTCGGAGGGTAAAGGAAAAGTTTACGTGCATTGCACTGCTGGACTGGGCAGGGCCCCTGCCGTTGCAATAGCATACCTGTACTGGTTTTGTGGAATGAATGCAACATATGAAGCACTGACTTCAAAAAGACCTTGTGGACCAAGTAAAAAAGCCATTCGCGGAGCCACATACGATCTATCGAAAAATGATCCAGGGAAGGAGCCATTCGAGAGCCTTCCAGATAACGCATTCGAGGATATTGCAGATTGGGAGAGAAACTTGATTCAGGATCGGGTGCGTGCAATACGTGCGGGTTCAACGTCGTTCGGTTTTTACCAGGATGATGGATTGGACAATATAGAATGA | 2304 | 44.88 | MSCIHNTPLPCFSASSSSFPRRNRCASFKSRIHCTLGGTVAEPKSTTSAEPLLLNAVRGEDVERPPVWLMRQAGRLYCSVVAVGFSIEILFARKDYLLHSVVDLVGFAAHKPDSYSTHKVSYQVICEKYPSFRQRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEASQVNEVREFVPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLQKFTSSMARYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVESVKKTHPDLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADVAVQGNVDPGVLFGSKEFITKRINDTVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAKGIRSADLLLKTHQISKFYTILITSIVNEREEQRERISASQKKMGASSLACFSSLFAVFPSHNNAHNKSLPFCSNPSKPLFRLNKIRCGLPESGIRQNPSSSRTSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTLIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSVIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNATYEALTSKRPCGPSKKAIRGATYDLSKNDPGKEPFESLPDNAFEDIADWERNLIQDRVRAIRAGSTSFGFYQDDGLDNIE | 767 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5552010 | 5558781 | + | CmaCh04G010770.1 | Cma04g01077 | 292158 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01077 | 767 | Pfam | Dual specificity phosphatase, catalytic domain | 586 | 697 | IPR000340 | GO:0008138|GO:0016311 | |
Cma04g01077 | 767 | PANTHER | UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC | 25 | 432 | - | - | |
Cma04g01077 | 767 | Pfam | Uroporphyrinogen decarboxylase (URO-D) | 52 | 82 | IPR000257 | GO:0004853|GO:0006779 | |
Cma04g01077 | 767 | Pfam | Uroporphyrinogen decarboxylase (URO-D) | 129 | 429 | IPR000257 | GO:0004853|GO:0006779 | |
Cma04g01077 | 767 | Hamap | Uroporphyrinogen decarboxylase [hemE]. | 50 | 432 | IPR006361 | GO:0004853|GO:0006779 | |
Cma04g01077 | 767 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 556 | 696 | IPR029021 | - | |
Cma04g01077 | 767 | TIGRFAM | hemE: uroporphyrinogen decarboxylase | 121 | 429 | IPR006361 | GO:0004853|GO:0006779 | |
Cma04g01077 | 767 | CDD | URO-D | 54 | 429 | IPR006361 | GO:0004853|GO:0006779 | |
Cma04g01077 | 767 | SUPERFAMILY | UROD/MetE-like | 52 | 432 | IPR038071 | - | |
Cma04g01077 | 767 | Gene3D | Protein tyrosine phosphatase superfamily | 546 | 751 | IPR029021 | - | |
Cma04g01077 | 767 | PANTHER | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED | 25 | 432 | - | - | |
Cma04g01077 | 767 | ProSitePatterns | Uroporphyrinogen decarboxylase signature 1. | 66 | 75 | IPR000257 | GO:0004853|GO:0006779 | |
Cma04g01077 | 767 | Gene3D | - | 39 | 432 | IPR038071 | - | |
Cma04g01077 | 767 | ProSitePatterns | Uroporphyrinogen decarboxylase signature 2. | 228 | 244 | IPR000257 | GO:0004853|GO:0006779 | |
Cma04g01077 | 767 | CDD | DSP_laforin-like | 562 | 707 | IPR045204 | GO:0019203|GO:0046838 | |
Cma04g01077 | 767 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 563 | 721 | IPR020422 | GO:0006470|GO:0008138 | |
Cma04g01077 | 767 | SMART | dsp_5 | 563 | 703 | IPR020422 | GO:0006470|GO:0008138 | |
Cma04g01077 | 767 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 640 | 679 | IPR000387 | GO:0016311|GO:0016791 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01077 | Cma-Chr4:5552010 | Cma16g00441 | Cma-Chr16:2199104 | 1.41E-127 | dispersed | |
Cma04g00115 | Cma-Chr4:558088 | Cma04g01077 | Cma-Chr4:5552010 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01077 | K01599 | - | csv:101212245 | 724.161 |