Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01090 ATGGATGAAATCCAAACCCCATGTGATTCCAACTCTTGTTCGAGACACCCACTTCCCGATTTTCATGTTTTGTTTACTCAGGCCGCTGCTGATGGGTTCTGTTCTTCAGGGAAAGAGCAGGAAAAATGGAAGATTCTGAGAAAAAACCCTAATGGGTTTCGTTTTGGATTGGGTTTGTTCTTTTTGTTACTTAATTTGGTCACCATTCGACCTGTTTTGAGCCAAGATTGGGATGGTGTGGTTGTCACACAGGCTGATTTCCAATCCCTTCAGGCGTTTAAGCAGGAGCTTGATGATCCTAAAGGGTTCTTGAAAAGTTGGAACGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGTGCTAAGGGACAGGTTATTGTTATTCAGCTTCCATGGAAGGGCTTGGGAGGTAGAATCACTGATAAGATCGGCCAACTTCAGGCGCTTAGGAAGCTTAGCTTACATGACAACTTCATAGGTGGATCAATCCCTTCTTCATTGGGACTTCTTCCGAATCTTCGAGGCGTTCAGTTGTTCAACAATCGATTTTCGGGTTCCATTCCGGCGTCATTGGGGCTTTGTCCTCTGCTTCAAACTCTTCATGTCAGTAACAATTTGCTCACCGGAGCTATCCCACCTACGTTGGCTAATTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTACGGGTTCGATCCCAATGAGTCTAACTCGATCAGTGTCACTTACTTATCTTGATCTTCAACACAACAATCTCTCAGGCAGCATCCCCGACTCTTGGGGCGGCGACGCCACTGATCAAAACCGGGTGTTTCAGCTCAAGTTGATGGCTCTTGATGGCAATCTCCTCTCAGGTATCATACCAGCTTCTTTAAGGAAGTTAAGTGAGCTTCAAGTGGTTTCTCTTGGCCATAATAGATTGAATGGTGGCATTCCAGAAGAAATTAGTAGGCTTTCTCTGCTCAAAACTCTGGATGTTTCTAACAATTTCCTTAATGGAAGTATGCCTCAAAGTTTTGATAGTTTAAGAAATCTCTCTGTTCTTAACTTGAGTAGAAACAGGTTCAATGGTCAAATTCCTGCAAATTTAGGGAACATTTCAACACTTAAACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGAATTGGAAGGTCTTCAATCCTTAAATGTCTCGTACAACAACCTTTCGGGTTCTGTTCCTTCGGCTCTCGCCGAAAAATTTAGTGCAAGTTCCTTTGTTGGGAACATCCAGCTCTGTGGGTTCAGTGGTTCAACTCCGTGCCCGTCCCCGGTTCCTTCTCTAGAAGCTCCAGCTCCTCCACCGGAAAGTTCGGTGTCTCGACATCGGAAGTTAAGTACTAAAGATATAATACTCATAGTAGCAGGAGCTCTCCTTCTAGTATTGGTTATAGTATTCTTTGTACTGCTGTGCTGCTTGATTAGGAAGAGGGCTGCTTCAAAAGAAAAGGGTGGTGGTGAGGCGGCGGCAGCAGCAGCAGCCGGGGCTGCGAGGCCGAAGAAGGACGTCCCTCTGACTAGCAGTGAAGTTGAAGTGGGAGGAGGGGATGCCGGTGGGAAGCTCGTCCATTTCGACGGGCAAACGGTGTTCACAGCAGATGATCTATTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAGATCACTAAGAGCCAGAAAGAATTTGAAGCAGAGGTCAACATTCTTGGCAAGGTCAGGCATCCAAATCTTCTAGCTTTAAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGCCGAACGGGAGTCTTGCAGCGTTCCTGCACGCTCGTGGCCCGGACACATCCATTGATTGGCCGACGAGGATGAAGATTGCTCAGGGTATGACTCGTGGCCTGTGTCACCTTCACACGCACGAGAACAATATTCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACACAAATGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACAGCAGCCGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTCGGGTATCGAGCACCAGAGCTCTCGAAGCTGAAGAAAGCAAATACGAAAACCGACATTTACAGCCTTGGAGTAATCATATTGGAACTCTTGACAGGGAAGTCACCGGGTGAAGCCATGAACGGTGTCGATTTGCCACAATGGGTTGCATCAATAGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATTTGGAGTTGATGAGGGATGCATCTAGCATTGGAGATGAATTACTAAACACTCTGAAACTCGCTTTGCATTGTGTCGATCCTTCACCATCGGCAAGACCGGAAGTTCAACAAGTTCTGCAACAACTGCAGGAGATTAGGCCAGAAACCACTCCCAGTTCTGGGGATGATGGAGCAGGAGGAGGACCACCCCCTTCGACAAGCGAGTGA 2559 45.92 MDEIQTPCDSNSCSRHPLPDFHVLFTQAAADGFCSSGKEQEKWKILRKNPNGFRFGLGLFFLLLNLVTIRPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITDKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPLLQTLHVSNNLLTGAIPPTLANSTKLYWLNLSFNSFTGSIPMSLTRSVSLTYLDLQHNNLSGSIPDSWGGDATDQNRVFQLKLMALDGNLLSGIIPASLRKLSELQVVSLGHNRLNGGIPEEISRLSLLKTLDVSNNFLNGSMPQSFDSLRNLSVLNLSRNRFNGQIPANLGNISTLKQLDLSQNNLSGEIPASLAELEGLQSLNVSYNNLSGSVPSALAEKFSASSFVGNIQLCGFSGSTPCPSPVPSLEAPAPPPESSVSRHRKLSTKDIILIVAGALLLVLVIVFFVLLCCLIRKRAASKEKGGGEAAAAAAAGAARPKKDVPLTSSEVEVGGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKVRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTHENNIHGNLTSSNILLDEYTNAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASSIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLQEIRPETTPSSGDDGAGGGPPPSTSE 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5610847 5614000 + CmaCh04G010900.1 Cma04g01090 292171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01090 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 348 835 - -
Cma04g01090 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 18 357 - -
Cma04g01090 852 Gene3D Transferase(Phosphotransferase) domain 1 636 840 - -
Cma04g01090 852 MobiDBLite consensus disorder prediction 828 852 - -
Cma04g01090 852 SMART LRR_typ_2 301 324 IPR003591 -
Cma04g01090 852 SMART LRR_typ_2 247 270 IPR003591 -
Cma04g01090 852 SMART LRR_typ_2 349 373 IPR003591 -
Cma04g01090 852 SMART LRR_typ_2 150 174 IPR003591 -
Cma04g01090 852 SMART LRR_typ_2 325 348 IPR003591 -
Cma04g01090 852 SMART LRR_typ_2 397 420 IPR003591 -
Cma04g01090 852 SUPERFAMILY L domain-like 123 419 - -
Cma04g01090 852 ProSiteProfiles Protein kinase domain profile. 558 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01090 852 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Cma04g01090 852 Gene3D Ribonuclease Inhibitor 239 340 IPR032675 -
Cma04g01090 852 Gene3D Ribonuclease Inhibitor 341 436 IPR032675 -
Cma04g01090 852 SUPERFAMILY Protein kinase-like (PK-like) 562 826 IPR011009 -
Cma04g01090 852 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515
Cma04g01090 852 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Cma04g01090 852 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Cma04g01090 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 348 835 - -
Cma04g01090 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 18 357 - -
Cma04g01090 852 PRINTS Leucine-rich repeat signature 249 262 - -
Cma04g01090 852 PRINTS Leucine-rich repeat signature 373 386 - -
Cma04g01090 852 CDD STKc_IRAK 564 817 - -
Cma04g01090 852 Pfam Protein tyrosine and serine/threonine kinase 561 826 IPR001245 GO:0004672|GO:0006468
Cma04g01090 852 Gene3D Ribonuclease Inhibitor 82 238 IPR032675 -
Cma04g01090 852 Gene3D Phosphorylase Kinase; domain 1 564 635 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00125 Cma04g01090 ECH
Cma04g01090 Cma04g00125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01090 Cma-Chr4:5610847 Cma11g00586 Cma-Chr11:2810031 6.52E-18 dispersed
Cma16g01043 Cma-Chr16:8012040 Cma04g01090 Cma-Chr4:5610847 8.33E-25 dispersed
Cma17g01148 Cma-Chr17:7978657 Cma04g01090 Cma-Chr4:5610847 2.71E-36 dispersed
Cma18g00513 Cma-Chr18:3088911 Cma04g01090 Cma-Chr4:5610847 6.18E-37 dispersed
Cma14g00042 Cma-Chr14:179836 Cma04g01090 Cma-Chr4:5610847 0 wgd
Cma04g00125 Cma-Chr4:592508 Cma04g01090 Cma-Chr4:5610847 0 wgd
Cma04g01090 Cma-Chr4:5610847 Cma06g00213 Cma-Chr6:1087094 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68497 PF07714 PK_Tyr_Ser-Thr 1.20E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01090 - - csv:101214895 1343.95