Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01102 | ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTCCATAAGGTTTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTACGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAGTCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCATTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCGCCACCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAACGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA | 501 | 51.3 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQDHPIFPNCPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5668634 | 5669844 | - | CmaCh04G011020.1 | Cma04g01102 | 292183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01102 | 166 | Coils | Coil | 85 | 105 | - | - | |
Cma04g01102 | 166 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
Cma04g01102 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 2 | 116 | - | - | |
Cma04g01102 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Cma04g01102 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 116 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g00134 | Cma04g01102 | ECH | |
Cma04g01102 | Cma04g00134 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01102 | Cma-Chr4:5668634 | Cma13g00447 | Cma-Chr13:4990036 | 9.50E-54 | dispersed | |
Cma02g00024 | Cma-Chr2:124732 | Cma04g01102 | Cma-Chr4:5668634 | 1.57E-58 | transposed | |
Cma02g00725 | Cma-Chr2:4403586 | Cma04g01102 | Cma-Chr4:5668634 | 9.09E-66 | wgd | |
Cma20g00329 | Cma-Chr20:1612823 | Cma04g01102 | Cma-Chr4:5668634 | 1.85E-56 | wgd | |
Cma04g00134 | Cma-Chr4:631586 | Cma04g01102 | Cma-Chr4:5668634 | 1.15E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34834 | PF03195 | LOB | 6.20E-42 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01102 | - | - | csv:101204801 | 298.516 |