Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01102 ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTCCATAAGGTTTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGCCTAGTTTACGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAGTCAAGTCTCACAGCTACAGATGCAATTGGCTGTCGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCATTTTCCCAAATTGCCCTCAGATCCACTCCGACGAGAAACCCCCCACTCTTCTACTCCCGCCACCGTCATCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAACGTAATTTATGATGCCATTTTTGGACATGACATCGTTTCTTAA 501 51.3 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQDHPIFPNCPQIHSDEKPPTLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5668634 5669844 - CmaCh04G011020.1 Cma04g01102 292183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01102 166 Coils Coil 85 105 - -
Cma04g01102 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cma04g01102 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 116 - -
Cma04g01102 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cma04g01102 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00134 Cma04g01102 ECH
Cma04g01102 Cma04g00134 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01102 Cma-Chr4:5668634 Cma13g00447 Cma-Chr13:4990036 9.50E-54 dispersed
Cma02g00024 Cma-Chr2:124732 Cma04g01102 Cma-Chr4:5668634 1.57E-58 transposed
Cma02g00725 Cma-Chr2:4403586 Cma04g01102 Cma-Chr4:5668634 9.09E-66 wgd
Cma20g00329 Cma-Chr20:1612823 Cma04g01102 Cma-Chr4:5668634 1.85E-56 wgd
Cma04g00134 Cma-Chr4:631586 Cma04g01102 Cma-Chr4:5668634 1.15E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34834 PF03195 LOB 6.20E-42 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01102 - - csv:101204801 298.516