Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01105 ATGGCAGGAACGAAGCACATTGTAATGCCGATTTTTCTTCTAGTTTTATTGTTCTTGTTCACCAGTTCGAGAGCCGAACAACCACCGTTCAGTATAAAGCAACATCTGTCCACTGTTACCAGATATAGTGCTGCAAATGATGGTCGTAATAGTAACATTGCTCCCGCTCCTGATGGATGTGTTCCAATTCATTTAAATCTTGTGGCTAGGCACGGAACTCGAGATCCAACCAAAAAACGGATCAGAGAGTTAAACAACTTGGAAAGTCAATTAGACATGCTTATAAGAGGTTCTGTAGGAAATGACTCATCTCTGCGTAAAGTTCCTTCCTGGTTTAAGGGATGGAAATCTCCTTGGAGAGGAAAAGTGAAGGGTGGAGGATTAATTCCTGAAGGAGAGGAAGAATTGTATTATCTTGGGATCCGAACAAGAAAATTGTTTTCTGACTTGTTTAGTGATGATTATAGCTCAGAAGTATATACAATTAAAGCAACTCAGGTTCCTCGGGCATCAGCTAGTGCTGTGGCATTTGGTATGGGGCTATTTAGTGGGAGAGGAAGCCTTGGATCAGATCGTCGTCGAGCTTTTTCTGTCATCAGTGAGAGTCGTGCCAGTGATACGATGCTTAGGTTTTTTGATTGTTGTCAGAAGTACGAGGATTATAGGAAGAATCAGGAACCTGCCGTTGATAAACTCAAGGAACCTGTACTTGATGATATAACTAAGTCACTCACTGAACGTTATGGGCTAAATTTTACCCGGCTGCACATTTCATCACTTTGGTTTCTCTGTAAGCAGGAGGCATCCTTATTGAACATAACAAATCAAGCTTGTGGACTGTTCAGCCCTTCCGAGGTTGCTTTGTTGGAGTGGACGGATGATGTGGAGTTGTTTATATTGAAGGGTTATGGTAATTCATTAAACTATAAAATGGGAATTCCTTTGTTGGAAGATGTTGTTCAATCCATGAAGCAAGCCATCAAGGCCAAAGAAGAAAAGCTAGTTCTTGGCAGCTATGAGAAGGCAAGACTTCGTTTTGCTCATGCTGAAACTGTAGTTCCATTCACATGTTTGCTCGGGCTTTTCCTTGAAGGACCTGATGTTGGACAAACACTAAGGGAGCAGCCTTTGCAACTTCCTCCACAGCCTCCAGCTACTAGAATATGGAAGGGAAGCACCGTTGCACCTTTTGCTGGGAATAACATGCTGGTTCTCTATAACTGCCCTGCTAACTTGTCGGATAAGTACTTTGTGCGAGTTTTGCATAATGAAGAACCCATAACAATGCCGGGTTGTGACAATTCGGATTTTTGTTCCTTCAAAGTGTTCATGGAAAACATTGTGGCTCCTCATCTTGAACATGATTTTGACACATTGTGCACTGTGGATGGGGAAGAACCTGTGCTGGAGCCCGAATCAAACGCAGACGCTAGACTCAGATCTGAGTTGAATCTTTCTAACTCTCTCAGACCTTCCCATCTCTCAACCATGGCTTCCCATTCCCCTAACCTTGAGTGTCGGATGTACGAAGCCAAGTACCCGGAGGTAGACATGGCCGTCATGATCCAGGTCAAGAACATCGCCGACATGGGCGCCTACGTCTCCCTCCTTGAGTACAACAACATCGAGGGTATGATTCTCTTTTCCGAGCTCTCTCGCCGTCGTATTCGTAGTGTTAGCAGTTTAATTAAGGTTGGACGAATCGAGCCTGTCATGGTCCTCAGGGTCGACAAGGAGAAGGGCTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTTGCTGAGACTATGAACATTGATTTGGAGGACTTGTATGTCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCACGGTTTTGAGGCATTCAAGATCATTGTAACTGACCCTGACTCGGTGTTGAATTCTCTTACCCGTGAAGTCAAGGAAGCTGGTCCCGACGGACAGGAGGTAACTAAGGTAGTTCCCGCAATGTCTGAGGATGTCAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTTCGGGCTGATATCGAGATGAAGTGCTTCCAGTTTGATGGTGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGTTGGAAACGATGATTGTCCTGTTAAAATTAAATTGGTTGCTCCTCCACTCTACGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAGAAAGCGATCATTGCTTGCACCGAGGCGATCGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGGCACCTCGAGCGGTGAGTGAAAGAGATGACAAATTGCTTGCTGAGCACATGGCGAAGCTACGACAAGACAACGAAGAAATCAGCGGAGACGAGGATAGTGAGGAAGAGGAAGACACAGGGATGGGAGAAGTTGACGTCGAGAATGCAGTAAATCTTTCCCCCTTGAGAGTTGAAGATCTGAAGGGGTCTGTAGTTGCGAGAGCTATTCTTGACACAATTTTGGGAAACCCCTTTTTTGAGATAAAAAGGATTCCAGACAAAATCGGTACGAGCATTGCAGTCTTCTTCCAAGAACGAAGAACACCTTTCCTCTTCACTCTCTCACTCCTCCTCATTTGCTTTCTGATTCTCTTCTTCACCGATTCCCTTTCCCTCAACCCTCTCGTTCGAAAGTACTCCTCTCTTCGATCCCATTTTGGAACACCCTCTTCTTATTCTTCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTTTCGGCCTTCTTCTCGGCTTGATTTGAAACCATCTTCTGCAGATTCTGTTCTTTCTCACGATCTTGATTTTTCTAATTCTTCGGCGGCGAATTTCAGCTGGGAGCTCTGTGGTGGGTCTGTGGCCTTCGATTTCATTCCCTGCTTGGATAACTTCAAGGCGATTAAGGCTTTGAAGTCGAGGAGGCACATGGAGCACCGTGAACGCCATTGCCCTAGTCCCAGTCCGCGCTGTTTGATTCCGCTTCCCATTGGTTATAAGGTCCCGGTTCCCTGGCCCAAGAGTAGGGACATGATTTGGTACGATAATGTTCCTCATCCGAAGCTTGTTCAATACAAGAAAGACCAACATTGGGTTGTTAAGTTGGACGAGTATCTTAACTTTCCTGGAGGTGGTACACAGTTCAAGGATGGAGTTGATCACTATATTTACTTCATTCAGAAGGCTTTACCGGATATCAAATGGGGGGAAAACATCAGAGTTATTCTAGATGTTGGTTGTGGTGTTGCCAGCTTTGGTGGGTATTTACTGCAGAAAAATGTTCTTACCATGTCATTTGCCCCGAAGGATGAACATGAAGCACAGATACAATTTGCTTTAGAACGAGGAATTCCCGCAACTCTCTCAGTCATTGGAACTCAGAGGCTAACATTTCCTGACAATGCGTATGATTTGATACATTGTGCTCGTTGCAGGGTCCATTGGGATGCAGATGGTGGAAAACCATTATTGGAGCTCAACAGGATTCTCAGACCTGGAGGATATTTCATATGGTCTGCTACACCAGTTTATCGTGACAACGAAAGAGACAAGAATGTCTGGAAAGAAATGGTATTGCTAACGAAGTCAATGTGCTGGAAGGTAGTGCAAAAGACTATGGATTCATCTGGGGTTGGCCTTGTAATATATCAGAAGCCCACCTTGACATCTTGCTATGAAGAACGTAGCAAAAATGACCCTCCTATATGCCATGAAAAGAACAAGAGAAATAGTTCTTGGTATGTGCCCCTGACTAAATGTATTTCCCAGCTTCCAGTTGATAGCAAAGGCAACTATTATAATTGGCCTTCGCCATGGCCGGAGAGACTAACTAGCAGGCCTCCTAGCTTGTCGGTTGAACCAAATTCTGAGGAGAAGTTCTTGGAGGATACCAAACATTGGTCTACTGTTGTGTCAGATGTTTATCGAGATAACATCGGCCTAAACTGGTCGAGCATCCGAAATGTGCTGGATATGAATGCTGGCTATGGAGGGTTTGCAGCTGCATTGATTGATCTACCACTTTGGGTAATGAATGTTGTCCCCATAGACGTACCAGATACTTTGTCCATTGTTTTTGACCGAGGATTGATCGGTCTCTACCACGACTGGTGCGAGTCCTTCAACACCTACCCTCGAACCTACGATCTGCTACATTCCAGCTTTCTCTTCACATCTCTTAAGAGAAGATGCGACGTGGTAGCTATGGTCGTGGAGATGGATAGAATATTGAGGCCAGGCGGATATGTTTTGATTCAGGACAGCATGGAGGTAATAAAGGAGCTTGGTCCTATCTTTCATTCACTTCACTTGTCCGTTTCTGTTTATCAAGATCAGTTTCTTGTTGGAAAGAAGGGATTTTGGCGGCCAACAGCCCCTCATACCAAGTGA 4479 44.68 MAGTKHIVMPIFLLVLLFLFTSSRAEQPPFSIKQHLSTVTRYSAANDGRNSNIAPAPDGCVPIHLNLVARHGTRDPTKKRIRELNNLESQLDMLIRGSVGNDSSLRKVPSWFKGWKSPWRGKVKGGGLIPEGEEELYYLGIRTRKLFSDLFSDDYSSEVYTIKATQVPRASASAVAFGMGLFSGRGSLGSDRRRAFSVISESRASDTMLRFFDCCQKYEDYRKNQEPAVDKLKEPVLDDITKSLTERYGLNFTRLHISSLWFLCKQEASLLNITNQACGLFSPSEVALLEWTDDVELFILKGYGNSLNYKMGIPLLEDVVQSMKQAIKAKEEKLVLGSYEKARLRFAHAETVVPFTCLLGLFLEGPDVGQTLREQPLQLPPQPPATRIWKGSTVAPFAGNNMLVLYNCPANLSDKYFVRVLHNEEPITMPGCDNSDFCSFKVFMENIVAPHLEHDFDTLCTVDGEEPVLEPESNADARLRSELNLSNSLRPSHLSTMASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYVHVGWPLYRKYGHGFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKVVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAVGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIIACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAVNLSPLRVEDLKGSVVARAILDTILGNPFFEIKRIPDKIGTSIAVFFQERRTPFLFTLSLLLICFLILFFTDSLSLNPLVRKYSSLRSHFGTPSSYSSSPSPSSSSSSSFRPSSRLDLKPSSADSVLSHDLDFSNSSAANFSWELCGGSVAFDFIPCLDNFKAIKALKSRRHMEHRERHCPSPSPRCLIPLPIGYKVPVPWPKSRDMIWYDNVPHPKLVQYKKDQHWVVKLDEYLNFPGGGTQFKDGVDHYIYFIQKALPDIKWGENIRVILDVGCGVASFGGYLLQKNVLTMSFAPKDEHEAQIQFALERGIPATLSVIGTQRLTFPDNAYDLIHCARCRVHWDADGGKPLLELNRILRPGGYFIWSATPVYRDNERDKNVWKEMVLLTKSMCWKVVQKTMDSSGVGLVIYQKPTLTSCYEERSKNDPPICHEKNKRNSSWYVPLTKCISQLPVDSKGNYYNWPSPWPERLTSRPPSLSVEPNSEEKFLEDTKHWSTVVSDVYRDNIGLNWSSIRNVLDMNAGYGGFAAALIDLPLWVMNVVPIDVPDTLSIVFDRGLIGLYHDWCESFNTYPRTYDLLHSSFLFTSLKRRCDVVAMVVEMDRILRPGGYVLIQDSMEVIKELGPIFHSLHLSVSVYQDQFLVGKKGFWRPTAPHTK 1492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5682904 5700947 + CmaCh04G011050.1 Cma04g01105 292186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01105 1492 SMART S1_6 515 588 IPR022967 -
Cma04g01105 1492 MobiDBLite consensus disorder prediction 926 950 - -
Cma04g01105 1492 SUPERFAMILY eIF2alpha middle domain-like 590 695 IPR024054 -
Cma04g01105 1492 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1011 1222 IPR029063 -
Cma04g01105 1492 Gene3D EIF_2_alpha 701 823 IPR024055 -
Cma04g01105 1492 SUPERFAMILY Phosphoglycerate mutase-like 28 466 IPR029033 -
Cma04g01105 1492 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 987 1474 IPR004159 GO:0008168
Cma04g01105 1492 CDD HP_HAP_like 126 423 IPR000560 -
Cma04g01105 1492 Gene3D - 30 453 IPR029033 -
Cma04g01105 1492 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 880 1487 IPR004159 GO:0008168
Cma04g01105 1492 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1295 1457 IPR029063 -
Cma04g01105 1492 Pfam Eukaryotic translation initiation factor 2 alpha subunit 626 756 IPR011488 GO:0003723|GO:0003743
Cma04g01105 1492 Coils Coil 802 822 - -
Cma04g01105 1492 Gene3D Translation initiation factor 2; subunit 1; domain 2 591 695 IPR024054 -
Cma04g01105 1492 CDD S1_IF2_alpha 514 589 IPR044126 GO:0003723
Cma04g01105 1492 Pfam S1 RNA binding domain 514 588 IPR003029 GO:0003676
Cma04g01105 1492 Gene3D - 502 590 IPR012340 -
Cma04g01105 1492 MobiDBLite consensus disorder prediction 808 827 - -
Cma04g01105 1492 CDD AdoMet_MTases 1105 1200 - -
Cma04g01105 1492 ProSiteProfiles S1 domain profile. 517 588 IPR003029 GO:0003676
Cma04g01105 1492 PANTHER METHYLTRANSFERASE PMT23-RELATED 880 1487 - -
Cma04g01105 1492 MobiDBLite consensus disorder prediction 812 827 - -
Cma04g01105 1492 Gene3D Vaccinia Virus protein VP39 1314 1477 IPR029063 -
Cma04g01105 1492 SUPERFAMILY eIF-2-alpha, C-terminal domain 699 815 IPR024055 -
Cma04g01105 1492 Gene3D Vaccinia Virus protein VP39 1079 1276 IPR029063 -
Cma04g01105 1492 SUPERFAMILY Nucleic acid-binding proteins 507 588 IPR012340 -
Cma04g01105 1492 Pfam Histidine phosphatase superfamily (branch 2) 64 423 IPR000560 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01105 Cma04g00137 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01105 Cma-Chr4:5682904 Cma07g00451 Cma-Chr7:1966524 0 dispersed
Cma04g00137 Cma-Chr4:640577 Cma04g01105 Cma-Chr4:5682904 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01105 - - cpep:111799353 1171.76