Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01108 ATGTGCGCAGTTGCAGTGCCGACGACGACGACGATGACTCCATTATTCTCACCTCCAAAAGTTGCTTCACCATTCTACAAGTCGTACTCTCTGAATTATTCTTCTCCTTCTTATTCTTCTTTGTCGAGATCCGTATCCAGTCCGCCGTCTGTTTCGTCATTGCCTGATGTTGATACTGTTTTGAAGAGGAAGAGGCCGGCGAGAATTGACGTGCCGACGATTGTGCCGTCCATCGGTTTTGGATTTGGAACATTCGAGACGCCGGAGGTGATGGAGGAGGAAGGAGAAGGATATTCGGTTTATTGTAAAAGAGGAAGAAGACGGAGCGCCATGGAGGATCGATTCTCAGCCACAGTTGGAATTCAAGGAGATTCTCGGCAGGCTTTCTTCGGAATTTTCGATGGACACGGAGGAGCACAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTGATCGATCAAGTAACGAGAAGAACCGAATCGGAGCTCGAGGAAGCAATCAAAGACGGCTATCTGACGACCGATCGGGAAGTATCGGAGGAAGGAGTCAGCGGCGGTGCCTGTTCCGCCACCGCATTGATACGGAACGGACATCTCGCAGTCTCGAACGTCGGCGATTGTCGCGCCGTGTTGAGTCGAAAGGGAAAAGCGGAAGCCCTAACCTCCGATCACCGGGCGTGTAGAGAAGACGAGAGAAATCGGATCGAAAAATCGGGCGGTTATGTAGACTGTTGCCGTGGGGCATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACAAGCATCTGAAACAGTGGGTGATATCAGAGCCGGAGACGAGAGTAGTGAAGATCGAGGATGATTGCGATTACTTAATTCTTGCTTCTGATGGTCTTTGGGACAAGATTACGAATCAGGAAGCAGTAGACGTAGTGGAGGCAGCGTGCGGCGTGGAGATCATGGAGAATAAAAAACCAAATCCGCTATTAATGTCGGCCTGCAAACAGTTGGCGGCCTTGTCAGCATCAAGAGGCTCAGTCGACGATACCACTGTTATGATCATCAAATTAAATTGCCTTCATTTGAACTAA 1086 49.72 MCAVAVPTTTTMTPLFSPPKVASPFYKSYSLNYSSPSYSSLSRSVSSPPSVSSLPDVDTVLKRKRPARIDVPTIVPSIGFGFGTFETPEVMEEEGEGYSVYCKRGRRRSAMEDRFSATVGIQGDSRQAFFGIFDGHGGAQVAEIAAKRMSENVIDQVTRRTESELEEAIKDGYLTTDREVSEEGVSGGACSATALIRNGHLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDCCRGAWRVQGTLAVSRAIGDKHLKQWVISEPETRVVKIEDDCDYLILASDGLWDKITNQEAVDVVEAACGVEIMENKKPNPLLMSACKQLAALSASRGSVDDTTVMIIKLNCLHLN 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5711935 5713396 - CmaCh04G011080.1 Cma04g01108 292189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01108 361 Gene3D - 88 357 IPR036457 -
Cma04g01108 361 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Cma04g01108 361 SMART PP2C_4 88 353 IPR001932 -
Cma04g01108 361 PANTHER PROTEIN PHOSPHATASE 2C 34 356 IPR015655 GO:0004722|GO:0006470
Cma04g01108 361 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 34 356 - -
Cma04g01108 361 CDD PP2Cc 97 355 IPR001932 -
Cma04g01108 361 ProSiteProfiles PPM-type phosphatase domain profile. 97 355 IPR001932 -
Cma04g01108 361 Pfam Protein phosphatase 2C 103 347 IPR001932 -
Cma04g01108 361 SUPERFAMILY PP2C-like 97 356 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00146 Cma04g01108 ECH
Cma04g01108 Cma04g00146 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01108 Cma-Chr4:5711935 Cma12g00037 Cma-Chr12:136553 2.58E-70 dispersed
Cma15g00017 Cma-Chr15:115908 Cma04g01108 Cma-Chr4:5711935 7.45E-91 transposed
Cma13g00056 Cma-Chr13:481976 Cma04g01108 Cma-Chr4:5711935 3.64E-120 wgd
Cma04g00146 Cma-Chr4:698808 Cma04g01108 Cma-Chr4:5711935 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01108 K17506 - csv:101208170 491.115