Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01112 ATGTGCAGTGGCTCAAAGAATAAAGTTGCTTTCTCGAATTCCGCCATGGAAACTAAGTTTCAGAAGCTTAGAGATGGAGATTTATTCTCTGCGAATTCGATCTTGCTTGAACTATCAGCCTCTGATGATGTAGATGGGTTCAAGAGAGAGGTGGAAGAAAAGGATTTGGATGTTGATGAACCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCACTTATGATCGCTGCTATGTATGGAAGCTCTAAGGTTGTCAAATACTTAATTGAGACAGGCAAGGTTGATATCAACAGGGCTTGTGGATCAGATATGACCACTGCCCTTCACTGTGCCTCTGCTGGTGGCTCTGGTTCTTCCCTTGAAACCATCAAGCTCTTGCTTGACGGATCGGCTGACGTCGATTGCGTCGATGCGAACGGGAGAAAACCTGTTGATTTGATTGTTTCAGCTTGCAGGATGGTGTGTTATTCAGGAAGGAAAGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGTAGGTGATCTGAGCCTTTTCCTAGAAGAAGACCATCAGAAGATCTCAGCTTCCCTGTCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCCGTTGATATATCGCTGCCCGACATCAACAGCGGGATATATGGCACTGATGATTTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCGCACGATTGGACCGAGTGTCCTTTCGTTCATCCTGGCGAGAATGCTAGGCGTAGAGACCCCAAGAAGTACCCTTATAGTTGCGTCCCGTGCCCTGAATTCCGAAAGGGGGCTTGTCCTAAGGGAGATTCCTGTGAGTATGCACATGGTGTCTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGCAAGGATGAGACTGGCTGCACAAGGAAGGTCTGCTTCTTTGCTCACAGACCTGATGAGTTGCGCCCTGTATATGCATCGACAGGCTCAGGCATGCCTTCGCCTAGGTCTCTTTCGAGCAGTGCTGCAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCGTCGTTGTCGTTGCCGACTGCTTCAACGCCTCCCATGTCTCCCTTAGCATCGGTGTCTTCCCCTAAAAATGGGAACTTGTGGCAGAACAAGATTAACCTTACTCCTCCGGCTCTGCAGCTCCCTAGTAGTCGGTTGAAGGCGACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTTGGATTAGAAAAGAACGTGAGCCAAATGCAACATCAACAACAGTTGATCGACGAGATATCTCGGCTCTCCGCTCCTTCTTACTGGAGTGCAGACATAAGCAGGAGTGCAGAGTTGAAGCCATCAAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGCACGTCGCTAAAAACGCCAATCTCGGCTCAAGTTCAATCTCAGACCGGGCTGCAGATGCGCCAAAACATGAACCAACTCCGTGCGAGTTACCCGGCTAACTTATCATCCTCACCTGTAAAGAAACCCTCTTCATTTGGCTTTGATTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAGAGTTTCATTGATCGAGCTGCAGTGACCCGCCTTCCTGGGCTTACTGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCAGATTGGAACTCGCCCAATGGCAAACTAGACTGGGGAATGCACAGCAACGATCTCAACAAACTCAAGAAATCTGCCTCGTTCGGGATCCGAAACAATGGCATGGGAACTCCCACGTTCGCTTCACCAGTAGAGGAGCCTGATGTCTCTTGGGTAAACTCCTTGGTGAAAGATGTTCCCTCGGACAGGTTCGGAATGTTCGGTGCGGAGAAACGAGCATACAACCTCAAAAGAGACATCAACGAGATGCTACCGTCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGACAGTGGCATAA 2061 48.57 MCSGSKNKVAFSNSAMETKFQKLRDGDLFSANSILLELSASDDVDGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMYGSSKVVKYLIETGKVDINRACGSDMTTALHCASAGGSGSSLETIKLLLDGSADVDCVDANGRKPVDLIVSACRMVCYSGRKAMEMLLRGDGMAGVGDLSLFLEEDHQKISASLSAKEGSDKKEYPVDISLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHRPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSLPTASTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPSSRLKATLSARDLDLEMELLGLEKNVSQMQHQQQLIDEISRLSAPSYWSADISRSAELKPSNLDDMFGSLDSSLLSQLQGTSLKTPISAQVQSQTGLQMRQNMNQLRASYPANLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRLPGLTGAANSAATMSSHLSDWNSPNGKLDWGMHSNDLNKLKKSASFGIRNNGMGTPTFASPVEEPDVSWVNSLVKDVPSDRFGMFGAEKRAYNLKRDINEMLPSWMEQQLYAEQEQTVA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5737546 5739606 - CmaCh04G011120.1 Cma04g01112 292193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01112 686 PANTHER UNKEMPT FAMILY MEMBER 20 684 IPR045234 -
Cma04g01112 686 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Cma04g01112 686 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Cma04g01112 686 SMART ANK_2a 112 144 IPR002110 GO:0005515
Cma04g01112 686 SMART ANK_2a 77 107 IPR002110 GO:0005515
Cma04g01112 686 Gene3D - 31 172 IPR036770 -
Cma04g01112 686 SUPERFAMILY Ankyrin repeat 68 159 IPR036770 -
Cma04g01112 686 MobiDBLite consensus disorder prediction 334 355 - -
Cma04g01112 686 MobiDBLite consensus disorder prediction 340 355 - -
Cma04g01112 686 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Cma04g01112 686 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Cma04g01112 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Cma04g01112 686 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 20 684 - -
Cma04g01112 686 Gene3D - 271 333 - -
Cma04g01112 686 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Cma04g01112 686 Pfam Ankyrin repeats (3 copies) 75 144 IPR002110 GO:0005515
Cma04g01112 686 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00150 Cma04g01112 ECH
Cma04g01112 Cma04g00150 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00150 Cma-Chr4:731055 Cma04g01112 Cma-Chr4:5737546 0 dispersed
Cma04g01112 Cma-Chr4:5737546 Cma14g00450 Cma-Chr14:2142180 1.71E-166 dispersed
Cma16g00221 Cma-Chr16:1001423 Cma04g01112 Cma-Chr4:5737546 3.27E-51 dispersed
Cma02g00741 Cma-Chr2:4498059 Cma04g01112 Cma-Chr4:5737546 0 wgd
Cma20g00342 Cma-Chr20:1682067 Cma04g01112 Cma-Chr4:5737546 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34835 PF12796 Ank_2 1.20E-09 CL0465 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01112 - - csv:101203102 1165.21