Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01122 ATGGCCTTTTTCTTTTTTCTCCTCTTCTTTTCCTCTGTTTTCGCCTCTTCTCTGTTTCTCTTTCTCTTTCTCCGGCCGGCGAGATTCCGGCGTGCCAGGCTGCCACCGGGGACACTCGGCCTCCCCTTCATCGGAGAGTCTCTTCAACTCATCTCCGCTTACAAGACCGAGAACCCCGAACCCTTCATCGACGAGCGTGTGCGACGATTCGGACCGGTTTTTACAACCCACGTGTTCGGAGAGCCGACGGTTTTCTCGGCGGATTGGGAGACGAACCGGTTCATTCTTCAGAATGAGGAGAAGCTTTTCGAGTGCAGCTACCCGGGTTCGATTTCGAACCTGCTTGGGAAGCACTCTTTGTTGGTGATGAAAGGGAGTTTGCATAAGAGAATGCATTCTTTGACTATGAGCTTCGGGAATTCTTCCATTATTAGGGATCATCTTTTGGTCGACGTAGACCGGTTGATTCGGCTCAATTTGGAGTCTTGGACCGGCCGGATCTTCCTCATGGAGGAGGCTAAGAAGATAACGTTTGAGTTAGCAGTGAAGCAATTGATGAGCTTTGATCGGTGTGAATGGACTCAAAATCTGATGAAAGAATACCTTCTTGTCATCGAAGGCTTTTTTACCGTCCCTTTCCCTCTCTTCTCGTCTACTTACCGTCGAGCCATCCAGGCACGTGAGAAAGTGGCGGAGCAATTGCGGACGGTGGTGCGGCAGCGGAGGAAACAGAGCAAGGAGGGAGAGAGGAAGAAGGACATGCTTGGAGCGCTCCTCGCCGGAGAAGACGCCCTCTCCGACGACCAAATAGTAGATTTCTTATTGGCTCTACTGGTCGCCGGATATGAAACCACGTCAACCACCATGACCCTCGCCGTCAAGTTTCTCACGGAGACGCCGCTGGCTTTGGCCCAATTACAGGAAGAGCACGACCAAATCAAAGCAAGGAACAAGGAATCGCACCAACGCCTTCAATGGAATGATTACAAGTCCATGCCTTTCACCCAATGTGTTGTCAATGAAACATTAAGAGTTGCCAACATCATCAGTGGCGTGTTTAGGAGGGCAATCACCGACGTAAATATCAAAGGGTATACAATTCCAAAGGGATGGAAGGTTTTTGCATCATTTCGTGCAGTACATTTGGACCATGATCATTTCAAAGATGCTCGCTCTTTTAACCCATGGAGATGGCAAAAGACTAGCTCCGGCTCCACCACGCTTAATGCTTTTACACCCTTCGGAGGAGGTCCCAGACTATGCCCTGGTTATGAGCTTGCCAGAGTTGAGCTCTCTGTTTTCCTTCATCATCTCGTCACTCAATTCAGTTGGGTTCCAGCAGAAGATGATAAGTTGGTGTTTTTTCCAACAACAAGAACACAGAAGCGCTATCCAATCTATGTGACGCGGAAGAATGACACTACACACTCATCCACCCCACACATCAAGGGAGGCGAGGCGAATCGAGTCGAGTCAGGTTTCAATATGTAG 1491 49.43 MAFFFFLLFFSSVFASSLFLFLFLRPARFRRARLPPGTLGLPFIGESLQLISAYKTENPEPFIDERVRRFGPVFTTHVFGEPTVFSADWETNRFILQNEEKLFECSYPGSISNLLGKHSLLVMKGSLHKRMHSLTMSFGNSSIIRDHLLVDVDRLIRLNLESWTGRIFLMEEAKKITFELAVKQLMSFDRCEWTQNLMKEYLLVIEGFFTVPFPLFSSTYRRAIQAREKVAEQLRTVVRQRRKQSKEGERKKDMLGALLAGEDALSDDQIVDFLLALLVAGYETTSTTMTLAVKFLTETPLALAQLQEEHDQIKARNKESHQRLQWNDYKSMPFTQCVVNETLRVANIISGVFRRAITDVNIKGYTIPKGWKVFASFRAVHLDHDHFKDARSFNPWRWQKTSSGSTTLNAFTPFGGGPRLCPGYELARVELSVFLHHLVTQFSWVPAEDDKLVFFPTTRTQKRYPIYVTRKNDTTHSSTPHIKGGEANRVESGFNM 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5801740 5806285 - CmaCh04G011220.1 Cma04g01122 292203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01122 496 PANTHER CYTOCHROME P450 90A1 12 470 - -
Cma04g01122 496 Pfam Cytochrome P450 209 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PANTHER CYTOCHROME P450 26 12 470 - -
Cma04g01122 496 Gene3D Cytochrome P450 25 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 Coils Coil 303 323 - -
Cma04g01122 496 PRINTS P450 superfamily signature 280 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS P450 superfamily signature 412 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS P450 superfamily signature 421 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS E-class P450 group I signature 269 286 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS E-class P450 group I signature 289 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS E-class P450 group I signature 336 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS E-class P450 group I signature 411 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 PRINTS E-class P450 group I signature 421 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01122 496 MobiDBLite consensus disorder prediction 475 496 - -
Cma04g01122 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 414 423 IPR017972 GO:0005506|GO:0016705
Cma04g01122 496 SUPERFAMILY Cytochrome P450 28 470 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01122 Cma04g00159 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01122 Cma-Chr4:5801740 Cma14g01267 Cma-Chr14:10046353 1.89E-131 dispersed
Cma07g00460 Cma-Chr7:2004308 Cma04g01122 Cma-Chr4:5801740 5.81E-73 dispersed
Cma10g00342 Cma-Chr10:1593680 Cma04g01122 Cma-Chr4:5801740 5.80E-11 dispersed
Cma17g00733 Cma-Chr17:5975855 Cma04g01122 Cma-Chr4:5801740 6.86E-80 dispersed
Cma19g00605 Cma-Chr19:6623302 Cma04g01122 Cma-Chr4:5801740 1.07E-80 dispersed
Cma04g00780 Cma-Chr4:3975123 Cma04g01122 Cma-Chr4:5801740 3.77E-120 transposed
Cma04g02669 Cma-Chr4:18119812 Cma04g01122 Cma-Chr4:5801740 1.24E-93 transposed
Cma08g01310 Cma-Chr8:7913743 Cma04g01122 Cma-Chr4:5801740 7.79E-93 transposed
Cma04g00159 Cma-Chr4:787794 Cma04g01122 Cma-Chr4:5801740 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01122 K09588 - csv:101216594 842.802