Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01124 ATGGCTTCCGTATATCGTGATCGGACGTCGGAGTTTCGGTCACTGTCGGAGACGCTGAAGAAGATCGGCGGAGCCACAGCCGCCGTCAATTTAGCTCAAAATGAACCATCGGTGTCCACGCCCTCCAGATCGCCGGAAATTTCACGATCGGAATTCAGCAAGAAGGCCTCGCGTATTGGATTGGGAATCCAAGAAACCTCTCAGAAGATTGTGAGGCTTGCTCAGTTGGCAAAAAGATCATCAATGTTTGATGACCCAATCAGGGAAATTCAGGAAATGACTGCTTTGATTAAGAATGATATTACCTCCTTGAATGTAGCTATCACAGATTTGCAAACAATCCAGAACATGGAGATAGCAGAGGGGAATTATTCAGAGGATAGAGTTGTTCATTCAACAGCTGTCTGTGATGACCTGAAGAGCAGACTTATGGGAGCTACAAAACGGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGACAAATATTTTCTGCAAATGCAACCAGAGAAAGTCCTTTTCAAAATCAAGCCAAAACTGTAACGCAACCTCCACCTTGGTCAAGTAATACATCTGGAAGTGCCCAATCATCTTTATTATCATCAAATGGAGCTCAAGCTGGGGGTCAATTGAGACGAAGGTTAGCTGTTGAGAACACCCCATCACAGCAAATGGAGTTGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAATTTATTCCCAAAGTCGTGCCGTTGCTCTCCATAATGTGGAATCCACTATTTCAGAACTCAGTGGAATTTTTACACATCTTGCCACAATGGTAGCACATCAAGGAGAACTTGCTATTAGGATTGATGACAATATGGATGAATCATTGGCAAACGTAGAAGGTGCTCGGAGTGCTCTTTTAAGGCATCTTAACCAGATATCATCAAATAGATGGCTTCTTATAAAACTATTTGCCATTTTGATAATCTTCTTGATGCTCTTTATTTTCTTGGCGTAA 1011 42.93 MASVYRDRTSEFRSLSETLKKIGGATAAVNLAQNEPSVSTPSRSPEISRSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAITDLQTIQNMEIAEGNYSEDRVVHSTAVCDDLKSRLMGATKRLQDVLTTRTENIKANESRRQIFSANATRESPFQNQAKTVTQPPPWSSNTSGSAQSSLLSSNGAQAGGQLRRRLAVENTPSQQMELSMLQQVVPRQEIYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSALLRHLNQISSNRWLLIKLFAILIIFLMLFIFLA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5812955 5815855 - CmaCh04G011240.1 Cma04g01124 292205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01124 336 CDD SNARE_syntaxin5 248 333 - -
Cma04g01124 336 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma04g01124 336 MobiDBLite consensus disorder prediction 33 47 - -
Cma04g01124 336 Gene3D - 46 300 - -
Cma04g01124 336 SUPERFAMILY t-snare proteins 48 300 IPR010989 GO:0016020|GO:0016192
Cma04g01124 336 MobiDBLite consensus disorder prediction 33 53 - -
Cma04g01124 336 SMART tSNARE_6 240 307 IPR000727 -
Cma04g01124 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Cma04g01124 336 PANTHER SYNTAXIN-31 4 335 - -
Cma04g01124 336 MobiDBLite consensus disorder prediction 173 211 - -
Cma04g01124 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Cma04g01124 336 PANTHER SYNTAXIN 4 335 IPR045242 -
Cma04g01124 336 Pfam SNARE domain 282 333 IPR000727 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01124 Cma04g00161 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01124 Cma-Chr4:5812955 Cma05g00643 Cma-Chr5:3249770 3.56E-92 dispersed
Cma04g00161 Cma-Chr4:797518 Cma04g01124 Cma-Chr4:5812955 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01124 K08490 - csv:101213786 531.561