Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01127 ATGGAGGGAAAGGAGGAGGATGTCCGATTGGGAGCCAACAAGTTCACTGAGAGGCAGCCGATTGGGACTGCGGCGCAGAGCCAAGACGACGGCAAGGACTATAAGGAGCCTCCGCCGGCACCTCTGTTTGAGCCGGGGGAGCTCACTTCATGGTCCTTCTACAGAGCCGGAATAGCCGAGTTTTTCGCCACTTTCCTCTTCCTCTACATCACCGTTTTGACCGTCATGGGCGTCGTTCGCTCCAATGAAGCCAACGGCAACACTTGTAAGACCGTAGGGATCCAGGGGATCGCTTGGGCTTTCGGCGGTATGATTTTTGCTCTGGTTTACTGTACTGCTGGAATCTCCGGTGGCCACATTAACCCGGCGGTGACTTTCGGGCTGTTTCTGGCGAGGAAGCTATCCTTGACCAGGGCGATTTTCTACATGGTGATGCAGTGTCTTGGTGCCATCTGCGGTGCCGGCGTGGTAAAGGGGTTCCAACCCAAGCCCTACGACAGGCTCGGCGGTGGAGCTAACATGGTGAGCAAGGGGTACACCAAAGGGGACGGCCTTGGCGCTGAGATTGTGGGCACATTTATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGTAGCGCCAGAGACTCGCATGTTCCAATTTTGGCACCGCTACCAATTGGGTTCGCAGTGTTCCTAGTCCACTTGGCCACCATCCCGATCACCGGCACCGGCATCAACCCAGCTCGGAGTTTGGGAGCCGCCATCATCTACAACAACGAGAAAGCCTGGGATGACCACTGGATTTTCTGGGTGGGACCCTTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTGGTGATCAGGGCCATTCCCTTCAAGTCCAAGTGA 879 55.86 MEGKEEDVRLGANKFTERQPIGTAAQSQDDGKDYKEPPPAPLFEPGELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPKPYDRLGGGANMVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNEKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5823126 5824662 + CmaCh04G011270.1 Cma04g01127 292208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01127 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Cma04g01127 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cma04g01127 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Cma04g01127 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01127 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01127 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01127 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01127 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01127 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01127 292 PANTHER AQUAPORIN PIP1-4-RELATED 1 292 - -
Cma04g01127 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01127 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01127 292 MobiDBLite consensus disorder prediction 1 39 - -
Cma04g01127 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
Cma04g01127 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01127 Cma04g00163 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01127 Cma-Chr4:5823126 Cma04g01129 Cma-Chr4:5826721 0 dispersed
Cma20g00773 Cma-Chr20:3659244 Cma04g01127 Cma-Chr4:5823126 4.07E-21 dispersed
Cma04g01127 Cma-Chr4:5823126 Cma04g01128 Cma-Chr4:5825359 0 tandem
Cma04g00163 Cma-Chr4:804572 Cma04g01127 Cma-Chr4:5823126 0 wgd
Cma04g01127 Cma-Chr4:5823126 Cma06g00236 Cma-Chr6:1199027 5.75E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01127 K09872 - csv:101214512 569.696