Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01129 ATGCAATTGAAAACCGAAGATGAGGAGTTTACTGAAATGGAAGGGAAGGAAGAAGATGTAAGACTTGGAGCCAACAAGTTCAACGAGAGACAGCCGATCGGAACCGCGGCACAGAGTCAAGACGACGCCAAGGACTACCAGGAGCCACCGCCGGCGCCGCTTTTCGAGCCGGACGAGCTCACTTCATGGTCCTTTTACAGAGCCGGAATCGCCGAGTTTTTCGCCACTTTCCTCTTCCTCTACATCACTGTTTTGACCGTCATGGGTGTCGTTCGATCCAATGAAGCCAACGGCAACACTTGTAAGACCGTCGGGATCCAGGGGATCGCTTGGGCTTTTGGCGGTATGATTTTTGCTCTGGTTTACTGTACCGCTGGAATCTCCGGTGGGCACATTAACCCGGCGGTGACTTTCGGGCTGTTTCTGGCGAGGAAGCTGTCGTTGACAAGAGCAATTTTCTACATGGTAATGCAGTGCCTAGGAGCCATCTGCGGGGCCGGTGTGGTGAAGGGATTCCAACCCAATCCCTACAACAGGCTCGGCGGTGGAGCTAACATGGTGAGCAAGGGGTACACCAAAGGGGACGGCCTTGGCGCTGAGATTGTGGGCACATTTATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGTAGCGCCAGAGACTCTCATGTTCCAATTTTGGCGCCGCTACCAATTGGGTTCGCAGTGTTCCTAGTCCACTTGGCCACCATCCCGATCACCGGCACCGGCATTAACCCTGCCCGGAGTTTGGGAGCCGCCATCATCTACAACAACGAGAAAGCCTGGGATGACCACGTGATGGATTTTCTGGGTGGGACCATTCATCGGCGCTGCTCTAGCCGCCCTGTACCACCAAGTTGTGATCAGAGCCATCCCATTCAAGTCCAAGTGAAATCTCATCAAATCATGATAAATCAATCACAGCCGTCCGATGCCCGAAAAAAAATTCGCATCTTTATATATTTGGCTGTTTGCCCTTTTGGCTTTTGTATTGTAATTTTCGAATTTTGTATTTTGAAATCTTATTCTGTCGCTTTAATATGTAGAATCTTCCAGTTGCATAGCGAACGTCATCGAAATGTATCTTTTGGGATGAATGCTCCGTGGGAAAGTATGTCGGACGCGTTGATCAATGGATTGGCCGGAGCTGGAGGAGGAATCATTGCTCAGCTCATCACATACCCTCTTCAGACTGTGAATACTCGTCAGCAAACAGAGCGCGGCGTGAAGAAGGAAAAGAGGAAACCTGGAACGTTTCAACAGATGTGTCAGGTTGTAAAACATGAAGGATGGGACCGGCTCTACGGTGGCTTGGGGCCGTCTCTGGTTGGTACGGCTGCATCTCAGGGTGTTTACTATTATTTCTACCAAATATTCAGGAGCAAGGCTGAAGCTGCTTCTCTTGAACAAACGAAGGCAGGGATTGGAGATGGATCTGTTGGGATGCTTTCCTCGCTTCTGGTGGCTGCTATATCTGGGTGTGTCAATGTACTGTTGACAAATCCCATATGGGTGGTTGTTACTCGGATGCAGACACATAGAAAAGTCTCAAAGCCGTCTCTTCCCGGTGGAGCTCCATTGACTCCACTAGATGAAACAATTCCCACAGCAGTCGGTCCTCCTTCATACAGAACCACTCATGCTATTCAGGAACTTTATGAGGAAGCTGGAATCAGGGGTTTCTGGAAAGGGGTAATCCCAACGATGATCATGGTTAGCAACCCTTCTATACAGTACATGCTGTATGAAACAATGTTGAACAAATTGAAGAAACGACGTGGCTTACGGAAAGATGGCAATGGAGTTACTGCACTAGAGATATTTTTTCTTGGTGCATTGGCAAAACTTGGAGCTACTGTAGTAACCTATCCCCTTCTAGTTGTGAAGTCTAGGCTTCAAGCAAAGCAAGTCGTAGCTGGCGACAAAAGACATCAGTATAAAGGCACATTTGATGCCATCATCAAAATGATCCGATACGAAGGAGTATACGGGTTTTACAAAGGAATGGGCACGAAGATCGTGCAGAGTGTTCTGGCTGCTGCTGTGTTGTTCATGGTTAAGGAAGAACTTGTCCGGAGTGCTCGATTCCTTCTCACCAAGAATGGCGTTGGCAGAGTAAAACCAAAGCCTCAGTGA 2163 48.82 MQLKTEDEEFTEMEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYQEPPPAPLFEPDELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPNPYNRLGGGANMVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNEKAWDDHVMDFLGGTIHRRCSSRPVPPSCDQSHPIQVQVKSHQIMINQSQPSDARKKIRIFIYLAVCPFGFCIVIFEFCILKSYSVALICRIFQLHSERHRNVSFGMNAPWESMSDALINGLAGAGGGIIAQLITYPLQTVNTRQQTERGVKKEKRKPGTFQQMCQVVKHEGWDRLYGGLGPSLVGTAASQGVYYYFYQIFRSKAEAASLEQTKAGIGDGSVGMLSSLLVAAISGCVNVLLTNPIWVVVTRMQTHRKVSKPSLPGGAPLTPLDETIPTAVGPPSYRTTHAIQELYEEAGIRGFWKGVIPTMIMVSNPSIQYMLYETMLNKLKKRRGLRKDGNGVTALEIFFLGALAKLGATVVTYPLLVVKSRLQAKQVVAGDKRHQYKGTFDAIIKMIRYEGVYGFYKGMGTKIVQSVLAAAVLFMVKEELVRSARFLLTKNGVGRVKPKPQ 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5826721 5835744 + CmaCh04G011290.1 Cma04g01129 292210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01129 720 MobiDBLite consensus disorder prediction 1 25 - -
Cma04g01129 720 Pfam Mitochondrial carrier protein 386 470 IPR018108 -
Cma04g01129 720 Pfam Mitochondrial carrier protein 613 701 IPR018108 -
Cma04g01129 720 Pfam Mitochondrial carrier protein 489 601 IPR018108 -
Cma04g01129 720 Pfam Major intrinsic protein 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01129 720 Gene3D Mitochondrial carrier domain 386 706 IPR023395 -
Cma04g01129 720 PRINTS Major intrinsic protein family signature 150 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01129 720 PRINTS Major intrinsic protein family signature 67 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01129 720 PRINTS Major intrinsic protein family signature 113 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01129 720 PRINTS Major intrinsic protein family signature 235 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01129 720 PRINTS Major intrinsic protein family signature 199 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01129 720 SUPERFAMILY Mitochondrial carrier 381 698 IPR023395 -
Cma04g01129 720 MobiDBLite consensus disorder prediction 1 51 - -
Cma04g01129 720 TIGRFAM MIP: MIP family channel proteins 71 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01129 720 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 381 719 - -
Cma04g01129 720 ProSiteProfiles Solute carrier (Solcar) repeat profile. 611 702 IPR018108 -
Cma04g01129 720 Gene3D Glycerol uptake facilitator protein. 52 285 IPR023271 -
Cma04g01129 720 SUPERFAMILY Aquaporin-like 59 274 IPR023271 -
Cma04g01129 720 ProSiteProfiles Solute carrier (Solcar) repeat profile. 382 471 IPR018108 -
Cma04g01129 720 ProSitePatterns MIP family signature. 131 139 IPR022357 -
Cma04g01129 720 CDD MIP 67 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01129 720 ProSiteProfiles Solute carrier (Solcar) repeat profile. 489 597 IPR018108 -
Cma04g01129 720 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 381 719 IPR044712 GO:0006862|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01129 Cma04g00164 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00164 Cma-Chr4:807059 Cma04g01129 Cma-Chr4:5826721 0 dispersed
Cma04g01127 Cma-Chr4:5823126 Cma04g01129 Cma-Chr4:5826721 0 dispersed
Cma04g01129 Cma-Chr4:5826721 Cma15g01235 Cma-Chr15:7826897 2.46E-155 dispersed
Cma12g01076 Cma-Chr12:8509117 Cma04g01129 Cma-Chr4:5826721 4.58E-26 dispersed
Cma17g00259 Cma-Chr17:1340140 Cma04g01129 Cma-Chr4:5826721 5.59E-27 dispersed
Cma04g01128 Cma-Chr4:5825359 Cma04g01129 Cma-Chr4:5826721 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01129 K13354 - csv:101214274 583.948