Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01129 | ATGCAATTGAAAACCGAAGATGAGGAGTTTACTGAAATGGAAGGGAAGGAAGAAGATGTAAGACTTGGAGCCAACAAGTTCAACGAGAGACAGCCGATCGGAACCGCGGCACAGAGTCAAGACGACGCCAAGGACTACCAGGAGCCACCGCCGGCGCCGCTTTTCGAGCCGGACGAGCTCACTTCATGGTCCTTTTACAGAGCCGGAATCGCCGAGTTTTTCGCCACTTTCCTCTTCCTCTACATCACTGTTTTGACCGTCATGGGTGTCGTTCGATCCAATGAAGCCAACGGCAACACTTGTAAGACCGTCGGGATCCAGGGGATCGCTTGGGCTTTTGGCGGTATGATTTTTGCTCTGGTTTACTGTACCGCTGGAATCTCCGGTGGGCACATTAACCCGGCGGTGACTTTCGGGCTGTTTCTGGCGAGGAAGCTGTCGTTGACAAGAGCAATTTTCTACATGGTAATGCAGTGCCTAGGAGCCATCTGCGGGGCCGGTGTGGTGAAGGGATTCCAACCCAATCCCTACAACAGGCTCGGCGGTGGAGCTAACATGGTGAGCAAGGGGTACACCAAAGGGGACGGCCTTGGCGCTGAGATTGTGGGCACATTTATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGTAGCGCCAGAGACTCTCATGTTCCAATTTTGGCGCCGCTACCAATTGGGTTCGCAGTGTTCCTAGTCCACTTGGCCACCATCCCGATCACCGGCACCGGCATTAACCCTGCCCGGAGTTTGGGAGCCGCCATCATCTACAACAACGAGAAAGCCTGGGATGACCACGTGATGGATTTTCTGGGTGGGACCATTCATCGGCGCTGCTCTAGCCGCCCTGTACCACCAAGTTGTGATCAGAGCCATCCCATTCAAGTCCAAGTGAAATCTCATCAAATCATGATAAATCAATCACAGCCGTCCGATGCCCGAAAAAAAATTCGCATCTTTATATATTTGGCTGTTTGCCCTTTTGGCTTTTGTATTGTAATTTTCGAATTTTGTATTTTGAAATCTTATTCTGTCGCTTTAATATGTAGAATCTTCCAGTTGCATAGCGAACGTCATCGAAATGTATCTTTTGGGATGAATGCTCCGTGGGAAAGTATGTCGGACGCGTTGATCAATGGATTGGCCGGAGCTGGAGGAGGAATCATTGCTCAGCTCATCACATACCCTCTTCAGACTGTGAATACTCGTCAGCAAACAGAGCGCGGCGTGAAGAAGGAAAAGAGGAAACCTGGAACGTTTCAACAGATGTGTCAGGTTGTAAAACATGAAGGATGGGACCGGCTCTACGGTGGCTTGGGGCCGTCTCTGGTTGGTACGGCTGCATCTCAGGGTGTTTACTATTATTTCTACCAAATATTCAGGAGCAAGGCTGAAGCTGCTTCTCTTGAACAAACGAAGGCAGGGATTGGAGATGGATCTGTTGGGATGCTTTCCTCGCTTCTGGTGGCTGCTATATCTGGGTGTGTCAATGTACTGTTGACAAATCCCATATGGGTGGTTGTTACTCGGATGCAGACACATAGAAAAGTCTCAAAGCCGTCTCTTCCCGGTGGAGCTCCATTGACTCCACTAGATGAAACAATTCCCACAGCAGTCGGTCCTCCTTCATACAGAACCACTCATGCTATTCAGGAACTTTATGAGGAAGCTGGAATCAGGGGTTTCTGGAAAGGGGTAATCCCAACGATGATCATGGTTAGCAACCCTTCTATACAGTACATGCTGTATGAAACAATGTTGAACAAATTGAAGAAACGACGTGGCTTACGGAAAGATGGCAATGGAGTTACTGCACTAGAGATATTTTTTCTTGGTGCATTGGCAAAACTTGGAGCTACTGTAGTAACCTATCCCCTTCTAGTTGTGAAGTCTAGGCTTCAAGCAAAGCAAGTCGTAGCTGGCGACAAAAGACATCAGTATAAAGGCACATTTGATGCCATCATCAAAATGATCCGATACGAAGGAGTATACGGGTTTTACAAAGGAATGGGCACGAAGATCGTGCAGAGTGTTCTGGCTGCTGCTGTGTTGTTCATGGTTAAGGAAGAACTTGTCCGGAGTGCTCGATTCCTTCTCACCAAGAATGGCGTTGGCAGAGTAAAACCAAAGCCTCAGTGA | 2163 | 48.82 | MQLKTEDEEFTEMEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYQEPPPAPLFEPDELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPNPYNRLGGGANMVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNEKAWDDHVMDFLGGTIHRRCSSRPVPPSCDQSHPIQVQVKSHQIMINQSQPSDARKKIRIFIYLAVCPFGFCIVIFEFCILKSYSVALICRIFQLHSERHRNVSFGMNAPWESMSDALINGLAGAGGGIIAQLITYPLQTVNTRQQTERGVKKEKRKPGTFQQMCQVVKHEGWDRLYGGLGPSLVGTAASQGVYYYFYQIFRSKAEAASLEQTKAGIGDGSVGMLSSLLVAAISGCVNVLLTNPIWVVVTRMQTHRKVSKPSLPGGAPLTPLDETIPTAVGPPSYRTTHAIQELYEEAGIRGFWKGVIPTMIMVSNPSIQYMLYETMLNKLKKRRGLRKDGNGVTALEIFFLGALAKLGATVVTYPLLVVKSRLQAKQVVAGDKRHQYKGTFDAIIKMIRYEGVYGFYKGMGTKIVQSVLAAAVLFMVKEELVRSARFLLTKNGVGRVKPKPQ | 720 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5826721 | 5835744 | + | CmaCh04G011290.1 | Cma04g01129 | 292210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01129 | 720 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma04g01129 | 720 | Pfam | Mitochondrial carrier protein | 386 | 470 | IPR018108 | - | |
Cma04g01129 | 720 | Pfam | Mitochondrial carrier protein | 613 | 701 | IPR018108 | - | |
Cma04g01129 | 720 | Pfam | Mitochondrial carrier protein | 489 | 601 | IPR018108 | - | |
Cma04g01129 | 720 | Pfam | Major intrinsic protein | 59 | 280 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g01129 | 720 | Gene3D | Mitochondrial carrier domain | 386 | 706 | IPR023395 | - | |
Cma04g01129 | 720 | PRINTS | Major intrinsic protein family signature | 150 | 169 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g01129 | 720 | PRINTS | Major intrinsic protein family signature | 67 | 86 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g01129 | 720 | PRINTS | Major intrinsic protein family signature | 113 | 137 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g01129 | 720 | PRINTS | Major intrinsic protein family signature | 235 | 257 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g01129 | 720 | PRINTS | Major intrinsic protein family signature | 199 | 217 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g01129 | 720 | SUPERFAMILY | Mitochondrial carrier | 381 | 698 | IPR023395 | - | |
Cma04g01129 | 720 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cma04g01129 | 720 | TIGRFAM | MIP: MIP family channel proteins | 71 | 278 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g01129 | 720 | PANTHER | PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER | 381 | 719 | - | - | |
Cma04g01129 | 720 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 611 | 702 | IPR018108 | - | |
Cma04g01129 | 720 | Gene3D | Glycerol uptake facilitator protein. | 52 | 285 | IPR023271 | - | |
Cma04g01129 | 720 | SUPERFAMILY | Aquaporin-like | 59 | 274 | IPR023271 | - | |
Cma04g01129 | 720 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 382 | 471 | IPR018108 | - | |
Cma04g01129 | 720 | ProSitePatterns | MIP family signature. | 131 | 139 | IPR022357 | - | |
Cma04g01129 | 720 | CDD | MIP | 67 | 283 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g01129 | 720 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 489 | 597 | IPR018108 | - | |
Cma04g01129 | 720 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 381 | 719 | IPR044712 | GO:0006862|GO:0055085 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g01129 | Cma04g00164 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00164 | Cma-Chr4:807059 | Cma04g01129 | Cma-Chr4:5826721 | 0 | dispersed | |
Cma04g01127 | Cma-Chr4:5823126 | Cma04g01129 | Cma-Chr4:5826721 | 0 | dispersed | |
Cma04g01129 | Cma-Chr4:5826721 | Cma15g01235 | Cma-Chr15:7826897 | 2.46E-155 | dispersed | |
Cma12g01076 | Cma-Chr12:8509117 | Cma04g01129 | Cma-Chr4:5826721 | 4.58E-26 | dispersed | |
Cma17g00259 | Cma-Chr17:1340140 | Cma04g01129 | Cma-Chr4:5826721 | 5.59E-27 | dispersed | |
Cma04g01128 | Cma-Chr4:5825359 | Cma04g01129 | Cma-Chr4:5826721 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01129 | K13354 | - | csv:101214274 | 583.948 |