Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01169 ATGGCTAATCGATGGTGGGCTGAAAACATACCCACCACCACGGACAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCATAGAAGCTGTCGATGAAGAGAATAACTCCGGCAGCCATGAGAGAGCCGAACCAGGCACCAGCTCCAGCACGCGCCGTCCACGTGGCCGGCCACCGGGATCCAAAAACAAGCCGAAGCCGCCAGTGGTGGTCACGAAAGAGAGCCCCGATGCTCTCCGAAGCCACGTTTTAGAAATCGGCAGCGGCAGCGATATCGTCGAAAGCATCTCAAACTTCGCCCAACGCCGGCAGCGAGGAGTTTCGGTTCTCAGTGGAAATGGGGTCGTCGCCAATGTCACTCTCCGGCATCCGGCAGCCCCTAGCGGCGTTATTACGCTACAGGGACGATTCGACATACTGTCGCTCTCTGGTGCATTTTTGCCTGCCCCAGCTCCACCGGGAGCTACTGGGTTAACTGTCTACTTGGCTGGCGGGCAGGGGCAAGTTGTTGGTGGCATTGTTGTCGGTGCCCTCGTTGCAACAGGTCCGGTCATCGTTATCGCTGCCACTTTCACAAACGCTACATTCGAACGGCTGCCACTCGAGGAGGAGGAGGCAGCTGCTGGAGACAAGTCTGGAACAAGCCAGAACAATTCAACTTCTCAGAGCATGGGGGATCAACAGCAGCCTTCAATGGGCGTTTACAATATGGCTTCAAATTTGGTGCCAAATGGTCAGGTTTCATCACATGATGTGTTTTGGAGTCCTCCTAGAGCCCCACCTCCATTTTAA 798 55.01 MANRWWAENIPTTTDSSTSNPYSTPLKQSIEAVDEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPSGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEEEEAAAGDKSGTSQNNSTSQSMGDQQQPSMGVYNMASNLVPNGQVSSHDVFWSPPRAPPPF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5964845 5965642 + CmaCh04G011690.1 Cma04g01169 292250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01169 265 MobiDBLite consensus disorder prediction 1 35 - -
Cma04g01169 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 264 IPR014476 GO:0003680
Cma04g01169 265 MobiDBLite consensus disorder prediction 205 265 - -
Cma04g01169 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cma04g01169 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cma04g01169 265 MobiDBLite consensus disorder prediction 1 78 - -
Cma04g01169 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 264 - -
Cma04g01169 265 MobiDBLite consensus disorder prediction 212 253 - -
Cma04g01169 265 MobiDBLite consensus disorder prediction 43 58 - -
Cma04g01169 265 PIRSF ESCAROLA 7 263 IPR014476 GO:0003680
Cma04g01169 265 Gene3D - 81 210 - -
Cma04g01169 265 CDD DUF296 82 165 IPR005175 -
Cma04g01169 265 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01169 Cma15g00103 CCT
Cma04g01169 Cma04g00200 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01169 Cma-Chr4:5964845 Cma06g01339 Cma-Chr6:8796348 2.00E-72 dispersed
Cma15g00103 Cma-Chr15:479122 Cma04g01169 Cma-Chr4:5964845 8.85E-74 wgd
Cma04g00200 Cma-Chr4:955547 Cma04g01169 Cma-Chr4:5964845 4.85E-168 wgd
Cma04g01169 Cma-Chr4:5964845 Cma04g02941 Cma-Chr4:19395948 8.83E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01169 - - csv:101217530 385.956