Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01170 ATGGCTGTACTTAACTCTTTTGATTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCTTGTGGCGCCTGCAAGTTTCTGAGGCGAAAATGCAGCGATCAATGCGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGCTGCATCTCCCCATGCATGTCCGAAGCCAGGCTGCTATTACCGTCACTTATGAAGCCCTTGAGCGCATGCGAGATCCCGCCTATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTCGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTGTGATGATGCCCAAAAGGATGATCCAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTGCCACTCAAATCATGTTGTTCACACATCAGGCTTTCATGTTTCAGTCGACGAGAATTTTGGTGGTTATCCATGGATACTTGGATGA 657 46.73 MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLCLGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5968312 5969125 - CmaCh04G011700.1 Cma04g01170 292251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01170 218 Pfam Lateral organ boundaries (LOB) domain 20 116 IPR004883 -
Cma04g01170 218 ProSiteProfiles LOB domain profile. 19 121 IPR004883 -
Cma04g01170 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 17 153 - -
Cma04g01170 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 153 - -
Cma04g01170 218 Coils Coil 100 120 - -
Cma04g01170 218 MobiDBLite consensus disorder prediction 1 21 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01170 Cma04g00202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01170 Cma-Chr4:5968312 Cma08g00953 Cma-Chr8:5951982 3.65E-45 dispersed
Cma04g00202 Cma-Chr4:958291 Cma04g01170 Cma-Chr4:5968312 2.89E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34840 PF03195 LOB 1.20E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01170 K13945 - csv:101204875 299.671