Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01180 ATGCCTGCCCTTGCGTTTACTCTTCTTGCTCTTCTCCTCTCCCTCCTCTCTCTCGGAGCTTCTTACTCCGACGGCCAGTGGCAGAATGCTCATGCTACTTTTTACGGCGGCAGTGACGGCTCTGGAACTATGGGAGGTGCTTGCGGTTATGGAAACTTGTACGACGATGGCTACGGTGTGAACACGGCGGCGCTGAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCTTGTTTCGAGATTAAGTGCGTTGACGATCCACAGTGGTGCCATCCCGGGAATCCGTCAATTATCATAACGGCCACGAACTTTTGCCCTCCGAACTTCGCGATTCCGAGCGACAATGGAGGGTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCTCCATGCCTATGTTCCTCAAGCTCGCCCAGTACAAAGCCGGAATTATTCCCGTCACTTATCGCAGGGTGGGTTGCGTGAAAAAAGGAGGAATAAGATTCAGTATGAACGGCTTCCAGTACTTCAACTTGGTGCTCATCTCAAACGTGGGAGGCGCAGGGGACGTGGTGGAGGTGAGCGTGAAAGGCAGCAGCAATAACAAATGGATGAGCATGAGACGCAACTGGGGCCAGAACTGGCAACCCGACACCGTCTTGGTTGGTCAGTCGCTGTCCTTTAGAGTCACAACCAGCGACCGCCGCACCGTCACCTCCTGGAACGTCGTCCCCTCTAACTGGCAGTTTGGGCAGACGTTCTCCGGTGACAATTTCAGCGTCTAA 765 54.51 MPALAFTLLALLLSLLSLGASYSDGQWQNAHATFYGGSDGSGTMGGACGYGNLYDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITATNFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVGCVKKGGIRFSMNGFQYFNLVLISNVGGAGDVVEVSVKGSSNNKWMSMRRNWGQNWQPDTVLVGQSLSFRVTTSDRRTVTSWNVVPSNWQFGQTFSGDNFSV 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6015443 6016887 + CmaCh04G011800.1 Cma04g01180 292261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01180 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cma04g01180 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cma04g01180 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cma04g01180 254 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Cma04g01180 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Cma04g01180 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Cma04g01180 254 Pfam Lytic transglycolase 62 149 IPR009009 -
Cma04g01180 254 PANTHER EXPANSIN-A4 11 253 - -
Cma04g01180 254 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Cma04g01180 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Cma04g01180 254 Pfam Expansin C-terminal domain 160 238 IPR007117 -
Cma04g01180 254 Gene3D - 159 252 IPR036749 -
Cma04g01180 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cma04g01180 254 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cma04g01180 254 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cma04g01180 254 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Cma04g01180 254 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Cma04g01180 254 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Cma04g01180 254 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Cma04g01180 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Cma04g01180 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Cma04g01180 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 249 IPR007117 -
Cma04g01180 254 SMART dpbb_1 62 149 IPR007112 -
Cma04g01180 254 PANTHER EXPANSIN-A15 11 253 IPR002963 GO:0009664
Cma04g01180 254 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Cma04g01180 254 Gene3D - 17 154 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01180 Cma04g02655 CCT
Cma04g01180 Cma04g02655 ECH
Cma04g00211 Cma04g01180 ECH
Cma04g02655 Cma04g01180 ECH
Cma04g01180 Cma04g00211 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01180 Cma-Chr4:6015443 Cma07g00999 Cma-Chr7:5154276 1.74E-143 dispersed
Cma01g00609 Cma-Chr1:3176629 Cma04g01180 Cma-Chr4:6015443 3.61E-137 wgd
Cma13g00123 Cma-Chr13:843427 Cma04g01180 Cma-Chr4:6015443 8.71E-139 wgd
Cma02g00797 Cma-Chr2:4725802 Cma04g01180 Cma-Chr4:6015443 2.11E-140 wgd
Cma20g00396 Cma-Chr20:1904421 Cma04g01180 Cma-Chr4:6015443 4.43E-138 wgd
Cma03g00422 Cma-Chr3:4515929 Cma04g01180 Cma-Chr4:6015443 1.89E-140 wgd
Cma04g00211 Cma-Chr4:1005461 Cma04g01180 Cma-Chr4:6015443 2.93E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01180 - - csv:101218950 410.223