Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01188 ATGGTTTTTCCTTCTTTCCCTTCCTATTTGGATCCTCCCAACTGGCAACCGTTGACGAATCAACAACCGGGAGGAAATGACACTACGTGCGATTCTAGCCAGGTTTTGTTACCGGGCGGTGGAGGTAGTGGTGGTGGTGGTGATGGTGATGGTGATGGTGGTGGAAGTGGTGTTGGGTCGATCAGACCCGTCTCGATGACTGATCGAGCTCGGTTGGCGAAGATACCGCAGCCGGAGGCTGGCCTTAAATGCCCTAGATGTGAATCTGCCAACACTAAGTTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGGCTTGTCGCCGGTACTGGACACGTGGTGGTGCACTGAGGAATGTTCCCGTCGGTGGTGGTTGCCGGAGGAATAAGAGGACCAAATCCCGGAATCGGTCCAAGTCTCCGGCGGGTGGTGAACGTCAATTATTAGCTGGATCAGCTAATTCCACTGCTGGGGTTTCACTTTCAACTCCAACCCATTTGCCCTTTTTATCTTCTTTGCATAATTTCACCAATTACGGCCTTAATTTGGGTATAATTCCGCCGCAACCTCCTCCAACAAGCGGTGGCTCCACCACAGGAGGAGTAGATGTTCATGAATTCCAAGCTGACCATTGGAGATTACAACCACCACAACCACAACAATTCCCTCTCTTGCCTAATGATCAACAACCAAATTTGCTTTACACTTTCGAGCCACCAGAAGCCACCGCAACTCGCTATAATCTCGGCTTGTTCTCAAGATTAGGGATCGAAAGCGACGTCGGAATGACAACAGAAGCCGAGGTGGTGAAGGTGGAGGAGAGTAAAGGGATGACCTTGGGGAAGAATTTTCAGTTCTGGGTCGGTGGCGGTGGTGGTAACGACGTTAGTGCATGGAGTGGCAGCGGAGGCGGCGGCGGCGATCTTCATGGCTTCACCTCATCCTCCGCCGGCCACTTATTGAGACAGTAA 987 50.76 MVFPSFPSYLDPPNWQPLTNQQPGGNDTTCDSSQVLLPGGGGSGGGGDGDGDGGGSGVGSIRPVSMTDRARLAKIPQPEAGLKCPRCESANTKFCYFNNYNLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAGGERQLLAGSANSTAGVSLSTPTHLPFLSSLHNFTNYGLNLGIIPPQPPPTSGGSTTGGVDVHEFQADHWRLQPPQPQQFPLLPNDQQPNLLYTFEPPEATATRYNLGLFSRLGIESDVGMTTEAEVVKVEESKGMTLGKNFQFWVGGGGGNDVSAWSGSGGGGGDLHGFTSSSAGHLLRQ 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6067895 6069668 + CmaCh04G011880.1 Cma04g01188 292269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01188 328 MobiDBLite consensus disorder prediction 1 62 - -
Cma04g01188 328 Pfam Dof domain, zinc finger 82 136 IPR003851 GO:0003677|GO:0006355
Cma04g01188 328 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Cma04g01188 328 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 9 262 - -
Cma04g01188 328 MobiDBLite consensus disorder prediction 12 36 - -
Cma04g01188 328 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Cma04g01188 328 MobiDBLite consensus disorder prediction 126 155 - -
Cma04g01188 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 262 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01188 - - - cmos:111458881 533.872
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01188 Cma04g00219 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00595 Cma-Chr1:3123663 Cma04g01188 Cma-Chr4:6067895 3.66E-58 dispersed
Cma04g01188 Cma-Chr4:6067895 Cma04g02639 Cma-Chr4:17995394 2.35E-56 dispersed
Cma03g00477 Cma-Chr3:4795972 Cma04g01188 Cma-Chr4:6067895 2.54E-32 transposed
Cma13g00133 Cma-Chr13:909757 Cma04g01188 Cma-Chr4:6067895 1.06E-49 wgd
Cma14g00157 Cma-Chr14:642222 Cma04g01188 Cma-Chr4:6067895 1.03E-54 wgd
Cma15g00398 Cma-Chr15:1778177 Cma04g01188 Cma-Chr4:6067895 8.62E-56 wgd
Cma02g00812 Cma-Chr2:4795103 Cma04g01188 Cma-Chr4:6067895 6.18E-53 wgd
Cma20g00412 Cma-Chr20:1971141 Cma04g01188 Cma-Chr4:6067895 1.02E-52 wgd
Cma03g00431 Cma-Chr3:4562700 Cma04g01188 Cma-Chr4:6067895 1.02E-43 wgd
Cma04g00219 Cma-Chr4:1060358 Cma04g01188 Cma-Chr4:6067895 1.47E-127 wgd
Cma04g01188 Cma-Chr4:6067895 Cma06g00304 Cma-Chr6:1443954 1.01E-48 wgd
Cma04g01188 Cma-Chr4:6067895 Cma07g00977 Cma-Chr7:4730534 8.20E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.6e-40 163.3
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 51.7 3.5e-40 162.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT1G29160 53.0 4.6e-40 161.8
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 53.8 6.0e-40 161.4
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.0e-41 165.2
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT2G34140 56.4 4.0e-41 165.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.2e-37 153.7
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 50.9 4.6e-37 151.8
Cma04g02639 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 8.6e-40 161.8
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 61.7 8.1e-38 155.2
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 64.8 1.4e-37 154.5
Cma14g00157 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.2e-36 151.4
Cma04g01188 CST 1 134 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.5e-36 151.0
Cma13g00133 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cma11g00141 CCT,CST,ECH 132 478 C2C2-Dof Transcription Factor Family AT3G47500 51.6 5.0e-83 305.8
Cma14g00157 CCT,CST,ECH 59 132 C2C2-Dof Transcription Factor Family AT5G02460 93.2 8.8e-39 158.7
Cma01g00595 CCT,CST,ECH 1 130 C2C2-Dof Transcription Factor Family AT5G02460 55.0 2.0e-38 157.5
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 60.4 2.0e-38 157.5
Cma13g00133 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 61.9 2.4e-36 150.6
Cma14g00157 CCT,CST,ECH 53 139 C2C2-Dof Transcription Factor Family AT3G55370 79.3 2.6e-37 153.7
Cma13g00133 CCT,CST,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 50.6 5.8e-37 152.5
Cma03g00431 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.8e-37 152.5
Cma11g00228 CCT,CST 30 311 C2C2-Dof Transcription Factor Family AT5G60850 51.9 4.0e-47 186.0
Cma10g00281 CCT,CST 26 318 C2C2-Dof Transcription Factor Family AT5G60850 52.8 8.8e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34841 PF02701 zf-Dof 3.20E-32 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01188 Cma_Chr04 FPKM 23.166056 27.944792 41.735767 42.29171 12.127937 11.388333 12.930593 2.963095 3.130903 3.602298