Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g01188 | ATGGTTTTTCCTTCTTTCCCTTCCTATTTGGATCCTCCCAACTGGCAACCGTTGACGAATCAACAACCGGGAGGAAATGACACTACGTGCGATTCTAGCCAGGTTTTGTTACCGGGCGGTGGAGGTAGTGGTGGTGGTGGTGATGGTGATGGTGATGGTGGTGGAAGTGGTGTTGGGTCGATCAGACCCGTCTCGATGACTGATCGAGCTCGGTTGGCGAAGATACCGCAGCCGGAGGCTGGCCTTAAATGCCCTAGATGTGAATCTGCCAACACTAAGTTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGGCTTGTCGCCGGTACTGGACACGTGGTGGTGCACTGAGGAATGTTCCCGTCGGTGGTGGTTGCCGGAGGAATAAGAGGACCAAATCCCGGAATCGGTCCAAGTCTCCGGCGGGTGGTGAACGTCAATTATTAGCTGGATCAGCTAATTCCACTGCTGGGGTTTCACTTTCAACTCCAACCCATTTGCCCTTTTTATCTTCTTTGCATAATTTCACCAATTACGGCCTTAATTTGGGTATAATTCCGCCGCAACCTCCTCCAACAAGCGGTGGCTCCACCACAGGAGGAGTAGATGTTCATGAATTCCAAGCTGACCATTGGAGATTACAACCACCACAACCACAACAATTCCCTCTCTTGCCTAATGATCAACAACCAAATTTGCTTTACACTTTCGAGCCACCAGAAGCCACCGCAACTCGCTATAATCTCGGCTTGTTCTCAAGATTAGGGATCGAAAGCGACGTCGGAATGACAACAGAAGCCGAGGTGGTGAAGGTGGAGGAGAGTAAAGGGATGACCTTGGGGAAGAATTTTCAGTTCTGGGTCGGTGGCGGTGGTGGTAACGACGTTAGTGCATGGAGTGGCAGCGGAGGCGGCGGCGGCGATCTTCATGGCTTCACCTCATCCTCCGCCGGCCACTTATTGAGACAGTAA | 987 | 50.76 | MVFPSFPSYLDPPNWQPLTNQQPGGNDTTCDSSQVLLPGGGGSGGGGDGDGDGGGSGVGSIRPVSMTDRARLAKIPQPEAGLKCPRCESANTKFCYFNNYNLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAGGERQLLAGSANSTAGVSLSTPTHLPFLSSLHNFTNYGLNLGIIPPQPPPTSGGSTTGGVDVHEFQADHWRLQPPQPQQFPLLPNDQQPNLLYTFEPPEATATRYNLGLFSRLGIESDVGMTTEAEVVKVEESKGMTLGKNFQFWVGGGGGNDVSAWSGSGGGGGDLHGFTSSSAGHLLRQ | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6067895 | 6069668 | + | CmaCh04G011880.1 | Cma04g01188 | 292269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g01188 | 328 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Cma04g01188 | 328 | Pfam | Dof domain, zinc finger | 82 | 136 | IPR003851 | GO:0003677|GO:0006355 | |
| Cma04g01188 | 328 | ProSitePatterns | Zinc finger Dof-type signature. | 84 | 120 | IPR003851 | GO:0003677|GO:0006355 | |
| Cma04g01188 | 328 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 9 | 262 | - | - | |
| Cma04g01188 | 328 | MobiDBLite | consensus disorder prediction | 12 | 36 | - | - | |
| Cma04g01188 | 328 | ProSiteProfiles | Zinc finger Dof-type profile. | 82 | 136 | IPR003851 | GO:0003677|GO:0006355 | |
| Cma04g01188 | 328 | MobiDBLite | consensus disorder prediction | 126 | 155 | - | - | |
| Cma04g01188 | 328 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 9 | 262 | IPR045174 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g01188 | Cma04g00219 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00595 | Cma-Chr1:3123663 | Cma04g01188 | Cma-Chr4:6067895 | 3.66E-58 | dispersed | |
| Cma04g01188 | Cma-Chr4:6067895 | Cma04g02639 | Cma-Chr4:17995394 | 2.35E-56 | dispersed | |
| Cma03g00477 | Cma-Chr3:4795972 | Cma04g01188 | Cma-Chr4:6067895 | 2.54E-32 | transposed | |
| Cma13g00133 | Cma-Chr13:909757 | Cma04g01188 | Cma-Chr4:6067895 | 1.06E-49 | wgd | |
| Cma14g00157 | Cma-Chr14:642222 | Cma04g01188 | Cma-Chr4:6067895 | 1.03E-54 | wgd | |
| Cma15g00398 | Cma-Chr15:1778177 | Cma04g01188 | Cma-Chr4:6067895 | 8.62E-56 | wgd | |
| Cma02g00812 | Cma-Chr2:4795103 | Cma04g01188 | Cma-Chr4:6067895 | 6.18E-53 | wgd | |
| Cma20g00412 | Cma-Chr20:1971141 | Cma04g01188 | Cma-Chr4:6067895 | 1.02E-52 | wgd | |
| Cma03g00431 | Cma-Chr3:4562700 | Cma04g01188 | Cma-Chr4:6067895 | 1.02E-43 | wgd | |
| Cma04g00219 | Cma-Chr4:1060358 | Cma04g01188 | Cma-Chr4:6067895 | 1.47E-127 | wgd | |
| Cma04g01188 | Cma-Chr4:6067895 | Cma06g00304 | Cma-Chr6:1443954 | 1.01E-48 | wgd | |
| Cma04g01188 | Cma-Chr4:6067895 | Cma07g00977 | Cma-Chr7:4730534 | 8.20E-35 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34841 | PF02701 | zf-Dof | 3.20E-32 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g01188 | - | - | cmos:111458881 | 533.872 |