Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01189 ATGACTAGAAAACCGGAAGGTGGTGTGGCCAAGAGGCACAGGGGACGCGTTCTCGTGGAACCGATCCAACGGTCCACATTCAATCTCCCTTCCTTCTTCCATTCCCTCTTCTCCGTTTCCCTCTTTAAATGCTTCTCTCTTTCCCTCGCTTTCTTTCTCCCCTTCATTCCTCCATTCTCTCGCATTGCATTCCCAGAAGGTTCGAAGATGGCAGATTCTGAGGACATTCAGCCTCTCGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGCCGTCCTCGCCATACAGGGGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGCAATTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCACCCAGTTCTCCTAACCGAGGCTCCTCTTAACCCGAAGGCCAATCGTGAGAAGATGACTCAAATCATGTTTGAGACTTTCAATACTCCGGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACGACTGGTATTGTGATGGACTCTGGTGACGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCCCTCCCACACGCCATCCTTCGTCTTGACCTTGCAGGCCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCCTTCACCACAACTGCAGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATTGCCCTTGATTATGAACAGGAGATGGAGACATCCAAGACCAGCTCATCGGTCGAAAAGAGCTATGAACTGCCTGATGGACAGGTGATCACCATCGGCGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAGCCCTCCATGATCGGGATGGAAGCGGCAGGCATTCATGAGACTACATACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTACGGCAACATTGTCCTATCTGGTGGTTCCACCATGTTCACGGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCCCTTGCCCCTAGCAGCATGAAAATAAAGGTGGTGGCGCCACCGGAGAGGAAGTACAGTGTCTGGATTGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAGGCAGAGTACGATGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1341 48.55 MTRKPEGGVAKRHRGRVLVEPIQRSTFNLPSFFHSLFSVSLFKCFSLSLAFFLPFIPPFSRIAFPEGSKMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6071036 6073584 + CmaCh04G011890.1 Cma04g01189 292270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01189 446 ProSitePatterns Actins signature 1. 124 134 IPR004001 -
Cma04g01189 446 ProSitePatterns Actins signature 2. 427 435 IPR004001 -
Cma04g01189 446 CDD NBD_sugar-kinase_HSP70_actin 79 252 - -
Cma04g01189 446 ProSitePatterns Actins and actin-related proteins signature. 175 187 IPR020902 -
Cma04g01189 446 SUPERFAMILY Actin-like ATPase domain 75 223 IPR043129 -
Cma04g01189 446 Gene3D Actin; Chain A, domain 4 251 342 - -
Cma04g01189 446 SUPERFAMILY Actin-like ATPase domain 218 446 IPR043129 -
Cma04g01189 446 Pfam Actin 74 446 IPR004000 -
Cma04g01189 446 PANTHER ACTIN 70 445 IPR004000 -
Cma04g01189 446 SMART actin_3 76 446 IPR004000 -
Cma04g01189 446 Gene3D - 79 440 - -
Cma04g01189 446 PANTHER ACTIN-97 70 445 - -
Cma04g01189 446 PRINTS Actin signature 97 106 IPR004000 -
Cma04g01189 446 PRINTS Actin signature 132 154 IPR004000 -
Cma04g01189 446 PRINTS Actin signature 120 131 IPR004000 -
Cma04g01189 446 PRINTS Actin signature 186 199 IPR004000 -
Cma04g01189 446 PRINTS Actin signature 211 230 IPR004000 -
Cma04g01189 446 PRINTS Actin signature 307 323 IPR004000 -
Cma04g01189 446 Gene3D - 209 409 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01189 Cma15g00386 CCT
Cma04g01189 Cma04g00220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01189 Cma-Chr4:6071036 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma04g00220 Cma-Chr4:1062715 Cma04g01189 Cma-Chr4:6071036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01189 K10355 - csv:101220611 747.273