Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01197 ATGAAGAGCCTTGTAGGGTTTTTGCATCCCTCAAAGTCAAAGCCATATTTGGGAGTGGTTTTTGTGCAGCTTGGCTATGCTGGAATGACCATTCTTGCTAAGACAGCATTGGACAAAGGGATGAGCCAATATGTTTTTGTGGCTTATCGTCAAATTGTTGCTACCCTTGTCTTTGCTCCTTTTGCTATCATCTTTGACAGGAAAGTGAGGACAAAAATGACGTTTTCGTTGTTCTTCAAAATTGTGATGCTCGGTTTATTAGAGCCGGTAGTGGATCAGAACTTGTTCTATGCTGGTATGAAGCTCACAACAGCAACCTTTGCAGCTGCGTTGTGCAATGTTCTTCCAGCTTTTGCGTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTAAACATTTTGAAAAGGGGAAGCCAAGCAAAAATCAAAGGAACCATAGTGACAGTAGGAGGAGCCATGATTATGACCTTCATAACAGGACCCATGTTGAATCTACCATGGACAAAGCCATACCACCCCTCTGCTTCTTCTTCTCCTTCAGCTGATTCTACAAATCACCAAAGCCCAATCAAGGGCTCCCTCATGATTGCCATTGGCTGCATTAGCTGGTCAGCCTTCATCATTCTTCAAGCAATTACATTGAAATGGTACCCGGCCGAGCTGTCGCTTACAGCATTGATATGCTTGGTGGGCAGCATTGGCGACACAGGGGTGGCTTTGGTGATGGAGAGGGGGAGCCCTTCTGCTTGGGCTTTGCACTTAGACACACAGCTTCTGGCTGTGGTTTATGGTGGAGTAATGTGCTCAGGAATAGCTTATTACATTCAAGGAGTGGTGATGCAAACAAAAGGGCCTGTTTTTGTGAGTGCATTCAATCCTCTGAGCTTGATTCTTGTAGCAATCATGAGCTCCTTCATCTTGTCTGAGAACATGATTATTGGAGCAGTGGCCATAATCATTGGGCTGTACATGGTTTTGTGGGGCAAAGCCAAAGATCAGCCTTCAGCTAACATGACATCTTGTGAGCAACAAATGGGTGGATCAAGTCAAGAGTTCGTGGGGATTGATGTTGGCAAAGAGGGAAGTAATTGA 1092 45.24 MKSLVGFLHPSKSKPYLGVVFVQLGYAGMTILAKTALDKGMSQYVFVAYRQIVATLVFAPFAIIFDRKVRTKMTFSLFFKIVMLGLLEPVVDQNLFYAGMKLTTATFAAALCNVLPAFAFLMAWACRLEKVNILKRGSQAKIKGTIVTVGGAMIMTFITGPMLNLPWTKPYHPSASSSPSADSTNHQSPIKGSLMIAIGCISWSAFIILQAITLKWYPAELSLTALICLVGSIGDTGVALVMERGSPSAWALHLDTQLLAVVYGGVMCSGIAYYIQGVVMQTKGPVFVSAFNPLSLILVAIMSSFILSENMIIGAVAIIIGLYMVLWGKAKDQPSANMTSCEQQMGGSSQEFVGIDVGKEGSN 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6104958 6107409 + CmaCh04G011970.1 Cma04g01197 292278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01197 363 PANTHER WAT1-RELATED PROTEIN 11 339 - -
Cma04g01197 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 153 - -
Cma04g01197 363 Pfam EamA-like transporter family 191 326 IPR000620 GO:0016020|GO:0016021
Cma04g01197 363 Pfam EamA-like transporter family 16 134 IPR000620 GO:0016020|GO:0016021
Cma04g01197 363 PANTHER WAT1-RELATED PROTEIN 11 339 IPR030184 GO:0016021|GO:0022857
Cma04g01197 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01197 Cma-Chr4:6104958 Cma04g01783 Cma-Chr4:8994980 0 dispersed
Cma04g01197 Cma-Chr4:6104958 Cma04g01198 Cma-Chr4:6111240 0 tandem
Cma15g00409 Cma-Chr15:1834809 Cma04g01197 Cma-Chr4:6104958 7.24E-123 wgd
Cma03g00442 Cma-Chr3:4615905 Cma04g01197 Cma-Chr4:6104958 3.82E-137 wgd
Cma04g00224 Cma-Chr4:1085071 Cma04g01197 Cma-Chr4:6104958 2.79E-166 wgd
Cma04g01197 Cma-Chr4:6104958 Cma07g00964 Cma-Chr7:4659149 1.18E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01197 - - cmos:111458151 521.546