Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01198 ATGGAGGGTTTTATGAGGCTTTTGGTGTCCGCAAAGCCATATTTAGGGGTCGTTTTTGTGCAGTTTGGGTCAGCTGGAATGGCGATCATTGCAAAGTCAGCTCTCAACAAAGGGATGAGCCAATATGTGTTTGTGTTCTATCGAATGGCTGTTGCTACTCTAGTCTTTGCTCCTTTTGCCATTGTGTTTGACAGGAAAGCGAGGACTAAGATGACCCTTCCGTTGTTCTTCAAGATTGTGATGCTCGGTTTATTAGAACCGGTGATCGATCTGAACTTGTACTTTACTGGTATGAAGTTCACAACAGCAACCTTTGCAGTCGCCATGTGCAATGTTCTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGGGGAAGCCAAGCAAAAATCATAGGAACCCTGGTGACAGTAGGAGGAGCCATGATTATGACCTTCATATCAGGACCCATGTTGAATCTGCCATGGACAAAGCCCTACCACCCCTCTGCTTCTTCTTCTTCTTCAGCTGGTTCTGCAAATCACCAAAGCCCAATCAAGGGCTCCCTCATGATTGCCATTGGCGACATTTCCTGGTCAGCTTTCATCATTCTTCAGATGATTACATTGAAATCGTACCCGGCCGAGCTGTCTCTTACAGCGTTGATTTGCTTGGTGGGTACCATTGGTGGCTGTGGGGTGGCTTTGGTCATGGAGAGGGGGAACCCTTCTGCTTGGGCTGTGCACTTTGATAGACAGCTTCTGGCAGTGGTTTATGCTGGAGTAATGTGTTCAGGGGTAACTTATTATATTCAAGGAGTAGTGATGAAAATAAAAGGGCCTGTTTTTGTCACTGCATTCAATCCTCTGAGCTTGATTCTTGTTGCAATCTTGAGCTCCTTCATCTTGTCTGAGATCATGTTCCTGGGAAGGATTGTTGGAGCAGTGGTGATAATCACAGGGTTGTACCTGGTTTTGTGGGGCAAAAGCAAGGATCAGCTTTTAGTTAAACCAGAATCTGATAAGATATCATCTGGTAAGCAACAAATGACTGCAACAGCGGGTGAGGAGGGCTCGAAGTCCGTTCAATCGAGTCAAGAGTTCACGGCGCTTGATGTTGGCAAAGAGGACACAAAATGA 1146 45.81 MEGFMRLLVSAKPYLGVVFVQFGSAGMAIIAKSALNKGMSQYVFVFYRMAVATLVFAPFAIVFDRKARTKMTLPLFFKIVMLGLLEPVIDLNLYFTGMKFTTATFAVAMCNVLPAFAFLMAWACRLEKVNILKRGSQAKIIGTLVTVGGAMIMTFISGPMLNLPWTKPYHPSASSSSSAGSANHQSPIKGSLMIAIGDISWSAFIILQMITLKSYPAELSLTALICLVGTIGGCGVALVMERGNPSAWAVHFDRQLLAVVYAGVMCSGVTYYIQGVVMKIKGPVFVTAFNPLSLILVAILSSFILSEIMFLGRIVGAVVIITGLYLVLWGKSKDQLLVKPESDKISSGKQQMTATAGEEGSKSVQSSQEFTALDVGKEDTK 381
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 6111240 6114105 + CmaCh04G011980.1 Cma04g01198 292279
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01198 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 333 - -
Cma04g01198 381 MobiDBLite consensus disorder prediction 344 373 - -
Cma04g01198 381 Pfam EamA-like transporter family 189 328 IPR000620 GO:0016020|GO:0016021
Cma04g01198 381 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020|GO:0016021
Cma04g01198 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cma04g01198 381 PANTHER WAT1-RELATED PROTEIN 9 342 IPR030184 GO:0016021|GO:0022857
Cma04g01198 381 PANTHER WAT1-RELATED PROTEIN 9 342 - -
Cma04g01198 381 MobiDBLite consensus disorder prediction 344 381 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00224 Cma-Chr4:1085071 Cma04g01198 Cma-Chr4:6111240 0 dispersed
Cma04g01198 Cma-Chr4:6111240 Cma04g01783 Cma-Chr4:8994980 0 dispersed
Cma04g01197 Cma-Chr4:6104958 Cma04g01198 Cma-Chr4:6111240 0 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01198 - - csv:101206072 577.015