Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01198 | ATGGAGGGTTTTATGAGGCTTTTGGTGTCCGCAAAGCCATATTTAGGGGTCGTTTTTGTGCAGTTTGGGTCAGCTGGAATGGCGATCATTGCAAAGTCAGCTCTCAACAAAGGGATGAGCCAATATGTGTTTGTGTTCTATCGAATGGCTGTTGCTACTCTAGTCTTTGCTCCTTTTGCCATTGTGTTTGACAGGAAAGCGAGGACTAAGATGACCCTTCCGTTGTTCTTCAAGATTGTGATGCTCGGTTTATTAGAACCGGTGATCGATCTGAACTTGTACTTTACTGGTATGAAGTTCACAACAGCAACCTTTGCAGTCGCCATGTGCAATGTTCTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGGGGAAGCCAAGCAAAAATCATAGGAACCCTGGTGACAGTAGGAGGAGCCATGATTATGACCTTCATATCAGGACCCATGTTGAATCTGCCATGGACAAAGCCCTACCACCCCTCTGCTTCTTCTTCTTCTTCAGCTGGTTCTGCAAATCACCAAAGCCCAATCAAGGGCTCCCTCATGATTGCCATTGGCGACATTTCCTGGTCAGCTTTCATCATTCTTCAGATGATTACATTGAAATCGTACCCGGCCGAGCTGTCTCTTACAGCGTTGATTTGCTTGGTGGGTACCATTGGTGGCTGTGGGGTGGCTTTGGTCATGGAGAGGGGGAACCCTTCTGCTTGGGCTGTGCACTTTGATAGACAGCTTCTGGCAGTGGTTTATGCTGGAGTAATGTGTTCAGGGGTAACTTATTATATTCAAGGAGTAGTGATGAAAATAAAAGGGCCTGTTTTTGTCACTGCATTCAATCCTCTGAGCTTGATTCTTGTTGCAATCTTGAGCTCCTTCATCTTGTCTGAGATCATGTTCCTGGGAAGGATTGTTGGAGCAGTGGTGATAATCACAGGGTTGTACCTGGTTTTGTGGGGCAAAAGCAAGGATCAGCTTTTAGTTAAACCAGAATCTGATAAGATATCATCTGGTAAGCAACAAATGACTGCAACAGCGGGTGAGGAGGGCTCGAAGTCCGTTCAATCGAGTCAAGAGTTCACGGCGCTTGATGTTGGCAAAGAGGACACAAAATGA | 1146 | 45.81 | MEGFMRLLVSAKPYLGVVFVQFGSAGMAIIAKSALNKGMSQYVFVFYRMAVATLVFAPFAIVFDRKARTKMTLPLFFKIVMLGLLEPVIDLNLYFTGMKFTTATFAVAMCNVLPAFAFLMAWACRLEKVNILKRGSQAKIIGTLVTVGGAMIMTFISGPMLNLPWTKPYHPSASSSSSAGSANHQSPIKGSLMIAIGDISWSAFIILQMITLKSYPAELSLTALICLVGTIGGCGVALVMERGNPSAWAVHFDRQLLAVVYAGVMCSGVTYYIQGVVMKIKGPVFVTAFNPLSLILVAILSSFILSEIMFLGRIVGAVVIITGLYLVLWGKSKDQLLVKPESDKISSGKQQMTATAGEEGSKSVQSSQEFTALDVGKEDTK | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6111240 | 6114105 | + | CmaCh04G011980.1 | Cma04g01198 | 292279 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01198 | 381 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 248 | 333 | - | - | |
Cma04g01198 | 381 | MobiDBLite | consensus disorder prediction | 344 | 373 | - | - | |
Cma04g01198 | 381 | Pfam | EamA-like transporter family | 189 | 328 | IPR000620 | GO:0016020|GO:0016021 | |
Cma04g01198 | 381 | Pfam | EamA-like transporter family | 14 | 153 | IPR000620 | GO:0016020|GO:0016021 | |
Cma04g01198 | 381 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 155 | - | - | |
Cma04g01198 | 381 | PANTHER | WAT1-RELATED PROTEIN | 9 | 342 | IPR030184 | GO:0016021|GO:0022857 | |
Cma04g01198 | 381 | PANTHER | WAT1-RELATED PROTEIN | 9 | 342 | - | - | |
Cma04g01198 | 381 | MobiDBLite | consensus disorder prediction | 344 | 381 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g01198 | Cma04g02624 | CCT | |
Cma04g00225 | Cma04g01198 | ECH | |
Cma04g02624 | Cma04g01198 | ECH | |
Cma04g01198 | Cma04g02624 | ECH | |
Cma04g01198 | Cma04g00225 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00224 | Cma-Chr4:1085071 | Cma04g01198 | Cma-Chr4:6111240 | 0 | dispersed | |
Cma04g01198 | Cma-Chr4:6111240 | Cma04g01783 | Cma-Chr4:8994980 | 0 | dispersed | |
Cma04g01197 | Cma-Chr4:6104958 | Cma04g01198 | Cma-Chr4:6111240 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01198 | - | - | csv:101206072 | 577.015 |