Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01198 ATGGAGGGTTTTATGAGGCTTTTGGTGTCCGCAAAGCCATATTTAGGGGTCGTTTTTGTGCAGTTTGGGTCAGCTGGAATGGCGATCATTGCAAAGTCAGCTCTCAACAAAGGGATGAGCCAATATGTGTTTGTGTTCTATCGAATGGCTGTTGCTACTCTAGTCTTTGCTCCTTTTGCCATTGTGTTTGACAGGAAAGCGAGGACTAAGATGACCCTTCCGTTGTTCTTCAAGATTGTGATGCTCGGTTTATTAGAACCGGTGATCGATCTGAACTTGTACTTTACTGGTATGAAGTTCACAACAGCAACCTTTGCAGTCGCCATGTGCAATGTTCTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGGGGAAGCCAAGCAAAAATCATAGGAACCCTGGTGACAGTAGGAGGAGCCATGATTATGACCTTCATATCAGGACCCATGTTGAATCTGCCATGGACAAAGCCCTACCACCCCTCTGCTTCTTCTTCTTCTTCAGCTGGTTCTGCAAATCACCAAAGCCCAATCAAGGGCTCCCTCATGATTGCCATTGGCGACATTTCCTGGTCAGCTTTCATCATTCTTCAGATGATTACATTGAAATCGTACCCGGCCGAGCTGTCTCTTACAGCGTTGATTTGCTTGGTGGGTACCATTGGTGGCTGTGGGGTGGCTTTGGTCATGGAGAGGGGGAACCCTTCTGCTTGGGCTGTGCACTTTGATAGACAGCTTCTGGCAGTGGTTTATGCTGGAGTAATGTGTTCAGGGGTAACTTATTATATTCAAGGAGTAGTGATGAAAATAAAAGGGCCTGTTTTTGTCACTGCATTCAATCCTCTGAGCTTGATTCTTGTTGCAATCTTGAGCTCCTTCATCTTGTCTGAGATCATGTTCCTGGGAAGGATTGTTGGAGCAGTGGTGATAATCACAGGGTTGTACCTGGTTTTGTGGGGCAAAAGCAAGGATCAGCTTTTAGTTAAACCAGAATCTGATAAGATATCATCTGGTAAGCAACAAATGACTGCAACAGCGGGTGAGGAGGGCTCGAAGTCCGTTCAATCGAGTCAAGAGTTCACGGCGCTTGATGTTGGCAAAGAGGACACAAAATGA 1146 45.81 MEGFMRLLVSAKPYLGVVFVQFGSAGMAIIAKSALNKGMSQYVFVFYRMAVATLVFAPFAIVFDRKARTKMTLPLFFKIVMLGLLEPVIDLNLYFTGMKFTTATFAVAMCNVLPAFAFLMAWACRLEKVNILKRGSQAKIIGTLVTVGGAMIMTFISGPMLNLPWTKPYHPSASSSSSAGSANHQSPIKGSLMIAIGDISWSAFIILQMITLKSYPAELSLTALICLVGTIGGCGVALVMERGNPSAWAVHFDRQLLAVVYAGVMCSGVTYYIQGVVMKIKGPVFVTAFNPLSLILVAILSSFILSEIMFLGRIVGAVVIITGLYLVLWGKSKDQLLVKPESDKISSGKQQMTATAGEEGSKSVQSSQEFTALDVGKEDTK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6111240 6114105 + CmaCh04G011980.1 Cma04g01198 292279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01198 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 333 - -
Cma04g01198 381 MobiDBLite consensus disorder prediction 344 373 - -
Cma04g01198 381 Pfam EamA-like transporter family 189 328 IPR000620 GO:0016020|GO:0016021
Cma04g01198 381 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020|GO:0016021
Cma04g01198 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cma04g01198 381 PANTHER WAT1-RELATED PROTEIN 9 342 IPR030184 GO:0016021|GO:0022857
Cma04g01198 381 PANTHER WAT1-RELATED PROTEIN 9 342 - -
Cma04g01198 381 MobiDBLite consensus disorder prediction 344 381 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01198 Cma04g02624 CCT
Cma04g00225 Cma04g01198 ECH
Cma04g02624 Cma04g01198 ECH
Cma04g01198 Cma04g02624 ECH
Cma04g01198 Cma04g00225 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00224 Cma-Chr4:1085071 Cma04g01198 Cma-Chr4:6111240 0 dispersed
Cma04g01198 Cma-Chr4:6111240 Cma04g01783 Cma-Chr4:8994980 0 dispersed
Cma04g01197 Cma-Chr4:6104958 Cma04g01198 Cma-Chr4:6111240 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01198 - - csv:101206072 577.015