Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01200 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCAAGAGATGCTGGATGTTTAACTGATGGAGAGATGAACTATGATAGCTCCTCCAAAATTGAAGCCAAACGTGGCCATCAATGGTTTATGGATGGCAGTGCACCAGAGCTATTCAGTAGCAAGAAGCAAGCAATAGAACCTGTAAATACTAGACCTGTTCCAGGAGTTCCACACATGAATGTTTCTCCCTGGGAAAACACTTCAAGCTTTCAGTCAGTTCCTGGGCACTTCACTGATCGTCTTTTCAGCTCTGAGCCAGTACGAACTGTCAACTTGGTCGATAGAGGCATCACTGTTGGAAATGCAAATATGGACATGGGAAGAAAGGAGTATGAGAATCATTTTGCAAACAACCCATCCGTTGGCTTGTCCATGTCCCAATCCATTGAAGATTCTTCATCATGCCTCAATTTTGGTGGGATTAGAAAAGTTAAAGTCAATCAAGTTAGGGATCCTGACATTGGCATGTCTTCCTCTTTGGGGCATGCCTATAGTAGAGGTGATAATGGTACAATTTCAATGGGTACAACATTTAACAAAAACCACGAGCACGCCATTTCATTGGGCCATACATATAATAGTCGAGATGAGAATGCCATCTCGGTTGGCCCTGTATATCACAAGACAGACGACAGTTTCATTTCCATGGGTCATGCTTTCAGCAAGGGTGATGAGAATTTTATTACAATTGGTCCTAACTATAGCAAGGGAGACAATAGCATCCTATCGATGAGCCAGCCTTTTGACAAAGGGGATGACTCTTTTATTTCAATGGGTCAATCTTATGAGAAGGCAGAAGGTAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGCATGAAAATTTTATCTCAATGGGGCCAACATATAGTAAGGCAGGTGATACTTTCATTTCAATGGCGCCCTCCTATAATAAGGGAAATGATGAGAATTTGTCCATGGGTCCAACCTTTGACAAGGTAAACTCGGACGTTGTACATGTCGGTCCTAAATTTGACAAAGCCGATTCTGGTTCAGTGTCAATGACTCACAACTATCATAAAGGTGAGAGTAATACCATATCTTTTGGAGGCTTTGATAATGAGAATGGGACAGGTAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGGCTTCTGCCCAAGCATCAGAAGTATCAACCATGAGAGATTCAGTTCATCCCAATGCGGAAGTGAACATTAACAATGCCATAAAAGTTGATGCTAAAATCGACACAAGTTCCAAGATTAGAGAGCCGAGGACGACTAAGAAGGTGCCACCCAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTGAAAGGAACAATAAAAGGAACTGGATACTTGTGCAGCTGTGACAACTGCAATCATTCAAAGGCTCTCAATGCTTATGAGTTTGAGAGGCACGCTGGCTGCAAAACCAAGCATCCAAATAACCACATTTACTTTGAGAATGGTAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCTCAGGAGATGTTATTTGATGCAATTCACAATGTGACGGGCTCTCCCATTAATCAGAAGAACTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACTCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAACTATGCCTTCTTGA 1755 41.48 MSFQHKSFWIPRDAGCLTDGEMNYDSSSKIEAKRGHQWFMDGSAPELFSSKKQAIEPVNTRPVPGVPHMNVSPWENTSSFQSVPGHFTDRLFSSEPVRTVNLVDRGITVGNANMDMGRKEYENHFANNPSVGLSMSQSIEDSSSCLNFGGIRKVKVNQVRDPDIGMSSSLGHAYSRGDNGTISMGTTFNKNHEHAISLGHTYNSRDENAISVGPVYHKTDDSFISMGHAFSKGDENFITIGPNYSKGDNSILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGASYNKGHENFISMGPTYSKAGDTFISMAPSYNKGNDENLSMGPTFDKVNSDVVHVGPKFDKADSGSVSMTHNYHKGESNTISFGGFDNENGTGNPSGGIISSYDLLMANQASAQASEVSTMRDSVHPNAEVNINNAIKVDAKIDTSSKIREPRTTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGTIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIHNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVTMPS 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6114568 6118225 - CmaCh04G012000.1 Cma04g01200 292281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01200 584 Pfam Tify domain binding domain 477 532 IPR032308 -
Cma04g01200 584 PANTHER AUTOIMMUNE REGULATOR 1 584 - -
Cma04g01200 584 PANTHER N-LYSINE METHYLTRANSFERASE 1 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01200 - - - csv:101206313 1090.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00226 Cma04g01200 ECH
Cma04g01200 Cma04g00226 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01200 Cma-Chr4:6114568 Cma06g00316 Cma-Chr6:1490210 3.92E-40 dispersed
Cma14g00167 Cma-Chr14:673119 Cma04g01200 Cma-Chr4:6114568 6.88E-43 wgd
Cma20g00425 Cma-Chr20:2015300 Cma04g01200 Cma-Chr4:6114568 1.02E-40 wgd
Cma04g00226 Cma-Chr4:1093147 Cma04g01200 Cma-Chr4:6114568 0 wgd
Cma04g01200 Cma-Chr4:6114568 Cma06g00312 Cma-Chr6:1478464 2.33E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g255 . . . Bda15g00213 . . Bma03g00301 . Cmo04g00229 Cmo04g01272 Cma04g01200 Cma04g00226 Car04g01102 . . . Cpe01g00193 . . . . . . . Cla07g00294 Cam07g0311 Cec07g0355 Cco07g0316 Clacu07g0303 Cmu07g0360 Cre07g0670 Cone1ag1303 Cone5ag0283 . . Lsi03g00413 . Chy10g00556 Cme10g00876 Blo13g00755 Blo04g00288 . . Bpe04g01846 . . Bma08g00988 . . . . . . . Cpe01g01104 . . . . . . . . . . . . . . . Lsi04g00872 Csa05g00695 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00316 . 18 818 PHD Transcription Factor Family AT3G53680 53.2 3.6e-244 842.0
Cma14g00167 . 25 857 PHD Transcription Factor Family AT3G53680 52.1 2.3e-238 822.8
Cma04g00226 CST,ECH 438 564 PHD Transcription Factor Family AT3G53680 55.1 6.0e-37 153.7
Cma20g00425 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 6.0e-37 153.7
Cma04g01200 CST,ECH 439 565 PHD Transcription Factor Family AT3G53680 54.3 3.0e-36 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01200 Cma_Chr04 FPKM 10.088889 11.971023 10.918529 10.813848 4.704397 4.261089 6.137474 6.932611 5.360798 6.598677