Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01200 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCAAGAGATGCTGGATGTTTAACTGATGGAGAGATGAACTATGATAGCTCCTCCAAAATTGAAGCCAAACGTGGCCATCAATGGTTTATGGATGGCAGTGCACCAGAGCTATTCAGTAGCAAGAAGCAAGCAATAGAACCTGTAAATACTAGACCTGTTCCAGGAGTTCCACACATGAATGTTTCTCCCTGGGAAAACACTTCAAGCTTTCAGTCAGTTCCTGGGCACTTCACTGATCGTCTTTTCAGCTCTGAGCCAGTACGAACTGTCAACTTGGTCGATAGAGGCATCACTGTTGGAAATGCAAATATGGACATGGGAAGAAAGGAGTATGAGAATCATTTTGCAAACAACCCATCCGTTGGCTTGTCCATGTCCCAATCCATTGAAGATTCTTCATCATGCCTCAATTTTGGTGGGATTAGAAAAGTTAAAGTCAATCAAGTTAGGGATCCTGACATTGGCATGTCTTCCTCTTTGGGGCATGCCTATAGTAGAGGTGATAATGGTACAATTTCAATGGGTACAACATTTAACAAAAACCACGAGCACGCCATTTCATTGGGCCATACATATAATAGTCGAGATGAGAATGCCATCTCGGTTGGCCCTGTATATCACAAGACAGACGACAGTTTCATTTCCATGGGTCATGCTTTCAGCAAGGGTGATGAGAATTTTATTACAATTGGTCCTAACTATAGCAAGGGAGACAATAGCATCCTATCGATGAGCCAGCCTTTTGACAAAGGGGATGACTCTTTTATTTCAATGGGTCAATCTTATGAGAAGGCAGAAGGTAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGCATGAAAATTTTATCTCAATGGGGCCAACATATAGTAAGGCAGGTGATACTTTCATTTCAATGGCGCCCTCCTATAATAAGGGAAATGATGAGAATTTGTCCATGGGTCCAACCTTTGACAAGGTAAACTCGGACGTTGTACATGTCGGTCCTAAATTTGACAAAGCCGATTCTGGTTCAGTGTCAATGACTCACAACTATCATAAAGGTGAGAGTAATACCATATCTTTTGGAGGCTTTGATAATGAGAATGGGACAGGTAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGGCTTCTGCCCAAGCATCAGAAGTATCAACCATGAGAGATTCAGTTCATCCCAATGCGGAAGTGAACATTAACAATGCCATAAAAGTTGATGCTAAAATCGACACAAGTTCCAAGATTAGAGAGCCGAGGACGACTAAGAAGGTGCCACCCAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTGAAAGGAACAATAAAAGGAACTGGATACTTGTGCAGCTGTGACAACTGCAATCATTCAAAGGCTCTCAATGCTTATGAGTTTGAGAGGCACGCTGGCTGCAAAACCAAGCATCCAAATAACCACATTTACTTTGAGAATGGTAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCTCAGGAGATGTTATTTGATGCAATTCACAATGTGACGGGCTCTCCCATTAATCAGAAGAACTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACTCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAACTATGCCTTCTTGA 1755 41.48 MSFQHKSFWIPRDAGCLTDGEMNYDSSSKIEAKRGHQWFMDGSAPELFSSKKQAIEPVNTRPVPGVPHMNVSPWENTSSFQSVPGHFTDRLFSSEPVRTVNLVDRGITVGNANMDMGRKEYENHFANNPSVGLSMSQSIEDSSSCLNFGGIRKVKVNQVRDPDIGMSSSLGHAYSRGDNGTISMGTTFNKNHEHAISLGHTYNSRDENAISVGPVYHKTDDSFISMGHAFSKGDENFITIGPNYSKGDNSILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGASYNKGHENFISMGPTYSKAGDTFISMAPSYNKGNDENLSMGPTFDKVNSDVVHVGPKFDKADSGSVSMTHNYHKGESNTISFGGFDNENGTGNPSGGIISSYDLLMANQASAQASEVSTMRDSVHPNAEVNINNAIKVDAKIDTSSKIREPRTTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGTIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIHNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVTMPS 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6114568 6118225 - CmaCh04G012000.1 Cma04g01200 292281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01200 584 Pfam Tify domain binding domain 477 532 IPR032308 -
Cma04g01200 584 PANTHER AUTOIMMUNE REGULATOR 1 584 - -
Cma04g01200 584 PANTHER N-LYSINE METHYLTRANSFERASE 1 584 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00226 Cma04g01200 ECH
Cma04g01200 Cma04g00226 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01200 Cma-Chr4:6114568 Cma06g00316 Cma-Chr6:1490210 3.92E-40 dispersed
Cma14g00167 Cma-Chr14:673119 Cma04g01200 Cma-Chr4:6114568 6.88E-43 wgd
Cma20g00425 Cma-Chr20:2015300 Cma04g01200 Cma-Chr4:6114568 1.02E-40 wgd
Cma04g00226 Cma-Chr4:1093147 Cma04g01200 Cma-Chr4:6114568 0 wgd
Cma04g01200 Cma-Chr4:6114568 Cma06g00312 Cma-Chr6:1478464 2.33E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01200 - - csv:101206313 1090.87