Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01207 ATGGTAGGCTCTGAGGACTCTGGTACTTCAGGGGCCGCGGTGCAGCTCTCTGGCAATCGGAAATTGTTCTGGCGCTCGGCCTCGTGGTCTGCATCACGTTCCTCCCTTCACCATCCGGAAGAGAACAGAGAAGGTGGAGACTCCAATGGGAATCTTGGTGATAGCAGTGGACCAAGCCGAATTTTCCCTGCCCCATTAACTCCAAGGTCGCAGCAGCATTGCAAAGCGAGGTCGTGTTTGCCTCCTTTACAACCTTTGTCCATAGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGATCGGATGACATTGGTGAGTGGCCGCAGCCTCCTACACCAAGTGGCCGAGGAAATTGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAACCCGGATAAGAATTGTGGGCTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAGGTGGCTGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATTACTCATGTGTTGAATTGTGTAGGTTTCGTTTGCCCTGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCTTCTGAGGATATTACCAGTATACTTTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCACGGTCGACGTCGTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCTGCAAGAGGTATTGCTGACCCCAATATGGGTTTTGCTTGCCAGTTATTACAATGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTACAGAGTTGCTCCACACTCGCCATATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCTACCTCATCTCTGGATTCTAGAGGTGCATTTATCATTCATGTACCCTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGAGATGCGAGGGGAGCTGTTGTGCAAATCGTTCGATATGAGAAGGTGCAAGGGCCTATTTATGTAATTAAAGAAGGGGAAGAACCAGCCAACTTTTGGGACTCTTTTGCAAACCTGTTACCGTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAGAGATAAGCCTTATCCAGGGGAGAGGAGAGTTGATTCCTATGATTTAGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTCGTTCCTCCATTTCCTTCATCTGAGAATGAGCATGAAACCCATCTTCCTGTCAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAGAGAGTTTGTATCAGCTCCCCGGATATCGCTCTCTAGGGTCTATTCCGACTCGTTGATGATGGTGCATTTTTCTGCAAAACCTTCATCGCCTTCAGTAATTTCTTTGTCTTCGTCATCTTCTTCGCCTATCCATCTTTCGCCAGACTCCCTTTCTTCTGATTCAAGTTCAAGTTCAAGTTCAAGTACCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCTTCTGCTTCTTCACCTACAGTTCAAGTTTCTTCAACTCTATCTAGTTTTTCTAACATGCATCTTATCTCATCCAATAGTTCCTTAGAATCGATGCCCAATGGTCCAGAAACTCGTGATGCAGTCCCTTTGGAATCAAGTTCTCGGTCATTCTCATTCCCATCCAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTGCAAAATCTCTGACATTGCCTACAATGCCTTGTAAAATCAGAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGATGGTAAGAGGAAAAACAAGATTTCTTGCTCTCTTAATGCATCATTTAATATGAAAAAGGGCTCAGAGCCTATGGATAATGTTGAAGATGAACAAACAAGTTCCACTGAGAATTTCAAGAATATCGAAAATGGAATGGATGTACGGGTAGGTTGCGTGGCCATGAGCCAGGACGAAACTGAAGTTGCTGGACAATCGGCTGGTTCATGGAAAAGCTATCCAAAACATTTTGAAGAAGGCATGGTATCCACTGTGTCAAATGGGAAGCAAGATGGTGAGTTTGTCCAACCAATGGTATACTGTTGGCCGGAGTTAGCAAAGATTGCAGCTTTTGACACAAGTTACCTCCATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATGTTTGGGTAGGAAATTCTTTTGACCATGATTTATCTCCGATTCAAGTAAAGAGGGACAAAGACTTGGTTGATCTAGAAAAGATAGACTGGGTTAAAGTTGGCCAATATGTGCTTACTGAAATAGGTCTGCCAGAAAATACAGAAATTAAGATCGTTAAAGAAGGCGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTTTTGTAG 2559 43.06 MVGSEDSGTSGAAVQLSGNRKLFWRSASWSASRSSLHHPEENREGGDSNGNLGDSSGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNCERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSTSSLDSRGAFIIHVPSAIFVWIGKNCEAIMERDARGAVVQIVRYEKVQGPIYVIKEGEEPANFWDSFANLLPLMDKSNSKINLGELRDKPYPGERRVDSYDLDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSMLRRKFASGNMREFVSAPRISLSRVYSDSLMMVHFSAKPSSPSVISLSSSSSSPIHLSPDSLSSDSSSSSSSSTKYFSESSLDSPSASSPTVQVSSTLSSFSNMHLISSNSSLESMPNGPETRDAVPLESSSRSFSFPSKKFSPSLAERRGSAKSLTLPTMPCKIRATNSASRFLATQEDGKRKNKISCSLNASFNMKKGSEPMDNVEDEQTSSTENFKNIENGMDVRVGCVAMSQDETEVAGQSAGSWKSYPKHFEEGMVSTVSNGKQDGEFVQPMVYCWPELAKIAAFDTSYLHSKAAVVIFSPSRYLGKKDDMMLYVWVGNSFDHDLSPIQVKRDKDLVDLEKIDWVKVGQYVLTEIGLPENTEIKIVKEGEETEEFLARLSLL 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6155331 6160755 - CmaCh04G012070.1 Cma04g01207 292288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01207 852 MobiDBLite consensus disorder prediction 574 619 - -
Cma04g01207 852 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 210 271 IPR000387 GO:0016311|GO:0016791
Cma04g01207 852 SUPERFAMILY Actin depolymerizing proteins 298 399 - -
Cma04g01207 852 PANTHER MKPA PROTEIN 1 846 - -
Cma04g01207 852 Gene3D Severin 302 397 IPR029006 -
Cma04g01207 852 MobiDBLite consensus disorder prediction 521 554 - -
Cma04g01207 852 ProSiteProfiles Dual specificity protein phosphatase domain profile. 151 293 IPR020422 GO:0006470|GO:0008138
Cma04g01207 852 MobiDBLite consensus disorder prediction 98 118 - -
Cma04g01207 852 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 146 292 IPR029021 -
Cma04g01207 852 Pfam Dual specificity phosphatase, catalytic domain 159 289 IPR000340 GO:0008138|GO:0016311
Cma04g01207 852 SMART VILL_6 300 397 IPR007122 GO:0051015
Cma04g01207 852 CDD DSP 152 286 - -
Cma04g01207 852 SMART dsp_5 151 290 IPR020422 GO:0006470|GO:0008138
Cma04g01207 852 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 846 - -
Cma04g01207 852 Pfam Gelsolin repeat 326 391 IPR007123 -
Cma04g01207 852 ProSitePatterns Tyrosine specific protein phosphatases active site. 235 245 IPR016130 GO:0016311|GO:0016791
Cma04g01207 852 MobiDBLite consensus disorder prediction 590 606 - -
Cma04g01207 852 MobiDBLite consensus disorder prediction 31 68 - -
Cma04g01207 852 Gene3D Protein tyrosine phosphatase superfamily 138 293 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01207 - - - csv:101223210 1480.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01207 Cma04g00232 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01207 Cma-Chr4:6155331 Cma04g01778 Cma-Chr4:8943123 0 dispersed
Cma04g01207 Cma-Chr4:6155331 Cma04g00232 Cma-Chr4:1128648 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g228 Blo04g00099 Blo13g00894 . . Bpe04g01698 . . Bma08g01128 Cmo04g00237 Cmo04g01282 Cma04g01207 Cma04g00232 Car04g01109 . . . Cpe01g00201 . . . . . . . . . . . . . . Cone1ag1316 Cone5ag0297 . . . . Chy10g00579 Cme10g00858 . . . . Bpe04g01698 . . . . . . . . . . Cpe01g01110 . . . . . . . . . . . . . . . Lsi04g00858 Csa05g00673 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma07g00685 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 3.1e-187 652.5
Cma11g01730 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.9 8.7e-182 634.4
Cma19g00587 CST 42 466 Protein tyrosine phosphatase (PTP) family AT3G50110 67.5 8.1e-172 601.3
Cma11g01149 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 66.0 2.2e-157 552.7
Cma14g00570 . 1 333 Protein tyrosine phosphatase (PTP) family AT5G39400 53.9 5.2e-111 398.7
Cma15g00486 . 672 1456 Protein tyrosine phosphatase (PTP) family AT3G10550 62.1 3.2e-293 1005.0
Cma15g00486 . 672 1457 Protein tyrosine phosphatase (PTP) family AT5G04540 59.1 6.5e-278 954.1
Cma10g00473 . 1 1167 Protein tyrosine phosphatase (PTP) family AT5G58160 52.6 0.0e+00 1103.2
Cma11g00467 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 0.0e+00 1088.9
Cma09g00412 CCT 1 1315 Protein tyrosine phosphatase (PTP) family AT5G58160 51.4 1.9e-300 1029.6
Cma01g01662 CCT 31 1404 Protein tyrosine phosphatase (PTP) family AT5G58160 50.6 2.0e-286 983.0
Cma09g01150 . 80 370 Protein tyrosine phosphatase (PTP) family AT1G71860 64.8 2.8e-110 396.0
Cma10g00020 . 14 662 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 3.3e-230 795.8
Cma10g00021 . 8 278 Protein tyrosine phosphatase (PTP) family AT5G23720 59.4 2.9e-77 287.7
Cma08g01167 . 77 215 Protein tyrosine phosphatase (PTP) family AT3G06110 55.0 8.8e-41 164.1
Cma11g01941 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 1.6e-72 269.6
Cma19g01054 . 1 185 Protein tyrosine phosphatase (PTP) family AT2G04550 68.6 5.8e-67 251.1
Cma04g01404 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.8 8.3e-116 414.1
Cma18g00926 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 67.3 1.4e-110 396.7
Cma04g01077 . 525 750 Protein tyrosine phosphatase (PTP) family AT3G10940 76.4 6.5e-105 377.9
Cma11g01431 . 144 590 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 1.2e-198 689.9
Cma02g00065 CST 9 215 Protein tyrosine phosphatase (PTP) family AT2G32960 57.7 2.1e-73 273.1
Cma20g00235 CST 43 209 Protein tyrosine phosphatase (PTP) family AT2G32960 65.3 8.7e-72 267.7
Cma11g01936 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 61.9 5.5e-66 248.4
Cma19g01048 . 186 380 Protein tyrosine phosphatase (PTP) family AT2G32960 60.4 4.3e-63 238.8
Cma11g00940 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.5 4.1e-53 205.7
Cma10g00831 . 13 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.5 2.0e-52 203.4
Cma06g00800 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.5e-100 363.6
Cma16g01120 . 98 430 Protein tyrosine phosphatase (PTP) family AT2G35680 53.5 1.5e-95 347.1
Cma05g01379 CST 20 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.4 7.4e-79 291.6
Cma12g01280 CST 17 205 Protein tyrosine phosphatase (PTP) family AT2G35680 67.2 2.1e-73 273.5
Cma16g01120 . 134 309 Protein tyrosine phosphatase (PTP) family AT5G56610 51.1 7.3e-44 174.5
Cma06g00800 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.3 4.7e-43 171.8
Cma12g01280 CST 27 206 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.2e-42 168.3
Cma20g00235 CST 40 209 Protein tyrosine phosphatase (PTP) family AT4G03960 76.5 2.6e-76 282.3
Cma02g00065 CST 18 215 Protein tyrosine phosphatase (PTP) family AT4G03960 68.7 7.6e-76 280.8
Cma11g01936 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.8 9.7e-71 263.8
Cma19g01048 . 183 380 Protein tyrosine phosphatase (PTP) family AT4G03960 58.1 3.8e-59 225.3
Cma11g00940 . 5 170 Protein tyrosine phosphatase (PTP) family AT4G03960 58.4 6.1e-57 218.0
Cma10g00831 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 60.9 2.0e-55 213.0
Cma11g00940 . 1 197 Protein tyrosine phosphatase (PTP) family AT3G02800 71.7 1.6e-81 299.7
Cma10g00831 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.4 3.2e-77 285.4
Cma02g00065 CST 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 62.9 6.2e-57 218.0
Cma20g00235 CST 37 198 Protein tyrosine phosphatase (PTP) family AT3G02800 61.1 4.5e-55 211.8
Cma11g01936 . 42 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.6 1.5e-50 196.8
Cma04g01207 CST 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 1.1e-61 235.7
Cma04g00232 CST 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 4.4e-58 223.8
Cma11g01149 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 66.0 2.2e-157 552.7
Cma14g00570 . 1 333 Protein tyrosine phosphatase (PTP) family AT5G39400 53.9 5.2e-111 398.7
Cma11g01730 CST 8 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.2 5.4e-221 764.6
Cma07g00685 . 31 604 Protein tyrosine phosphatase (PTP) family AT3G19420 63.2 1.2e-201 700.3
Cma19g00587 CST 40 479 Protein tyrosine phosphatase (PTP) family AT3G19420 73.7 9.8e-199 690.6
Cma07g00685 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 3.1e-187 652.5
Cma11g01730 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.9 8.7e-182 634.4
Cma19g00587 CST 42 466 Protein tyrosine phosphatase (PTP) family AT3G50110 67.5 8.1e-172 601.3
Cma10g00473 . 1 1167 Protein tyrosine phosphatase (PTP) family AT5G58160 52.6 0.0e+00 1103.2
Cma11g00467 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 0.0e+00 1088.9
Cma09g00412 CCT 1 1315 Protein tyrosine phosphatase (PTP) family AT5G58160 51.4 1.9e-300 1029.6
Cma01g01662 CCT 31 1404 Protein tyrosine phosphatase (PTP) family AT5G58160 50.6 2.0e-286 983.0
Cma15g00486 . 672 1456 Protein tyrosine phosphatase (PTP) family AT3G10550 62.1 3.2e-293 1005.0
Cma15g00486 . 672 1457 Protein tyrosine phosphatase (PTP) family AT5G04540 59.1 6.5e-278 954.1
Cma02g01340 . 64 247 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.3e-70 263.8
Cma16g01148 . 74 370 Protein tyrosine phosphatase (PTP) family AT2G35320 62.6 1.5e-110 396.7
Cma03g00375 . 1 666 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 2.8e-271 931.8
Cma03g00375 . 1 666 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 8.3e-252 867.1
Cma03g00375 . 60 666 Protein tyrosine phosphatase (PTP) family AT5G28210 55.4 5.6e-181 631.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004035 1 5 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01207 Cma_Chr04 FPKM 8.414593 9.585361 13.345946 12.733743 10.645604 8.858905 11.029119 16.308445 15.717534 16.811943