Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01207 ATGGTAGGCTCTGAGGACTCTGGTACTTCAGGGGCCGCGGTGCAGCTCTCTGGCAATCGGAAATTGTTCTGGCGCTCGGCCTCGTGGTCTGCATCACGTTCCTCCCTTCACCATCCGGAAGAGAACAGAGAAGGTGGAGACTCCAATGGGAATCTTGGTGATAGCAGTGGACCAAGCCGAATTTTCCCTGCCCCATTAACTCCAAGGTCGCAGCAGCATTGCAAAGCGAGGTCGTGTTTGCCTCCTTTACAACCTTTGTCCATAGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGATCGGATGACATTGGTGAGTGGCCGCAGCCTCCTACACCAAGTGGCCGAGGAAATTGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAACCCGGATAAGAATTGTGGGCTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAGGTGGCTGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATTACTCATGTGTTGAATTGTGTAGGTTTCGTTTGCCCTGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCTTCTGAGGATATTACCAGTATACTTTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCACGGTCGACGTCGTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCTGCAAGAGGTATTGCTGACCCCAATATGGGTTTTGCTTGCCAGTTATTACAATGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTACAGAGTTGCTCCACACTCGCCATATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCTACCTCATCTCTGGATTCTAGAGGTGCATTTATCATTCATGTACCCTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGAGATGCGAGGGGAGCTGTTGTGCAAATCGTTCGATATGAGAAGGTGCAAGGGCCTATTTATGTAATTAAAGAAGGGGAAGAACCAGCCAACTTTTGGGACTCTTTTGCAAACCTGTTACCGTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAGAGATAAGCCTTATCCAGGGGAGAGGAGAGTTGATTCCTATGATTTAGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTCGTTCCTCCATTTCCTTCATCTGAGAATGAGCATGAAACCCATCTTCCTGTCAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAGAGAGTTTGTATCAGCTCCCCGGATATCGCTCTCTAGGGTCTATTCCGACTCGTTGATGATGGTGCATTTTTCTGCAAAACCTTCATCGCCTTCAGTAATTTCTTTGTCTTCGTCATCTTCTTCGCCTATCCATCTTTCGCCAGACTCCCTTTCTTCTGATTCAAGTTCAAGTTCAAGTTCAAGTACCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCTTCTGCTTCTTCACCTACAGTTCAAGTTTCTTCAACTCTATCTAGTTTTTCTAACATGCATCTTATCTCATCCAATAGTTCCTTAGAATCGATGCCCAATGGTCCAGAAACTCGTGATGCAGTCCCTTTGGAATCAAGTTCTCGGTCATTCTCATTCCCATCCAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTGCAAAATCTCTGACATTGCCTACAATGCCTTGTAAAATCAGAGCAACAAATAGTGCCTCAAGGTTTCTTGCCACTCAAGAAGATGGTAAGAGGAAAAACAAGATTTCTTGCTCTCTTAATGCATCATTTAATATGAAAAAGGGCTCAGAGCCTATGGATAATGTTGAAGATGAACAAACAAGTTCCACTGAGAATTTCAAGAATATCGAAAATGGAATGGATGTACGGGTAGGTTGCGTGGCCATGAGCCAGGACGAAACTGAAGTTGCTGGACAATCGGCTGGTTCATGGAAAAGCTATCCAAAACATTTTGAAGAAGGCATGGTATCCACTGTGTCAAATGGGAAGCAAGATGGTGAGTTTGTCCAACCAATGGTATACTGTTGGCCGGAGTTAGCAAAGATTGCAGCTTTTGACACAAGTTACCTCCATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATGTTTGGGTAGGAAATTCTTTTGACCATGATTTATCTCCGATTCAAGTAAAGAGGGACAAAGACTTGGTTGATCTAGAAAAGATAGACTGGGTTAAAGTTGGCCAATATGTGCTTACTGAAATAGGTCTGCCAGAAAATACAGAAATTAAGATCGTTAAAGAAGGCGAAGAAACAGAGGAATTTCTTGCACGATTGAGTCTTTTGTAG 2559 43.06 MVGSEDSGTSGAAVQLSGNRKLFWRSASWSASRSSLHHPEENREGGDSNGNLGDSSGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNCERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSTSSLDSRGAFIIHVPSAIFVWIGKNCEAIMERDARGAVVQIVRYEKVQGPIYVIKEGEEPANFWDSFANLLPLMDKSNSKINLGELRDKPYPGERRVDSYDLDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSMLRRKFASGNMREFVSAPRISLSRVYSDSLMMVHFSAKPSSPSVISLSSSSSSPIHLSPDSLSSDSSSSSSSSTKYFSESSLDSPSASSPTVQVSSTLSSFSNMHLISSNSSLESMPNGPETRDAVPLESSSRSFSFPSKKFSPSLAERRGSAKSLTLPTMPCKIRATNSASRFLATQEDGKRKNKISCSLNASFNMKKGSEPMDNVEDEQTSSTENFKNIENGMDVRVGCVAMSQDETEVAGQSAGSWKSYPKHFEEGMVSTVSNGKQDGEFVQPMVYCWPELAKIAAFDTSYLHSKAAVVIFSPSRYLGKKDDMMLYVWVGNSFDHDLSPIQVKRDKDLVDLEKIDWVKVGQYVLTEIGLPENTEIKIVKEGEETEEFLARLSLL 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6155331 6160755 - CmaCh04G012070.1 Cma04g01207 292288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01207 852 MobiDBLite consensus disorder prediction 574 619 - -
Cma04g01207 852 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 210 271 IPR000387 GO:0016311|GO:0016791
Cma04g01207 852 SUPERFAMILY Actin depolymerizing proteins 298 399 - -
Cma04g01207 852 PANTHER MKPA PROTEIN 1 846 - -
Cma04g01207 852 Gene3D Severin 302 397 IPR029006 -
Cma04g01207 852 MobiDBLite consensus disorder prediction 521 554 - -
Cma04g01207 852 ProSiteProfiles Dual specificity protein phosphatase domain profile. 151 293 IPR020422 GO:0006470|GO:0008138
Cma04g01207 852 MobiDBLite consensus disorder prediction 98 118 - -
Cma04g01207 852 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 146 292 IPR029021 -
Cma04g01207 852 Pfam Dual specificity phosphatase, catalytic domain 159 289 IPR000340 GO:0008138|GO:0016311
Cma04g01207 852 SMART VILL_6 300 397 IPR007122 GO:0051015
Cma04g01207 852 CDD DSP 152 286 - -
Cma04g01207 852 SMART dsp_5 151 290 IPR020422 GO:0006470|GO:0008138
Cma04g01207 852 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 846 - -
Cma04g01207 852 Pfam Gelsolin repeat 326 391 IPR007123 -
Cma04g01207 852 ProSitePatterns Tyrosine specific protein phosphatases active site. 235 245 IPR016130 GO:0016311|GO:0016791
Cma04g01207 852 MobiDBLite consensus disorder prediction 590 606 - -
Cma04g01207 852 MobiDBLite consensus disorder prediction 31 68 - -
Cma04g01207 852 Gene3D Protein tyrosine phosphatase superfamily 138 293 IPR029021 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01207 Cma04g00232 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01207 Cma-Chr4:6155331 Cma04g01778 Cma-Chr4:8943123 0 dispersed
Cma04g01207 Cma-Chr4:6155331 Cma04g00232 Cma-Chr4:1128648 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01207 - - csv:101223210 1480.69