Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01215 ATGATACTCTCTGAGGCCCCAAAGAGTAATAACAATACAAAGTTAATGCACATCAAAGAATTCTTTGGCTTCTCCCATTCCTCTTCCTCAAAATCCCTCCATTCCTTTCAGAGCTCCGACCGCCGGAAACTACCGCCGTCAACCTATGACTCTTCCAAATCGGCGGCCATGGAAGAAGCCATCGTAAACTCCCAACCCATTATCACGAAATGGGACCCGGATTCCTCTGAGTTCAATAGAATCACCTTCCTCTTCCGCCATGGTCGAGCGGAATCTGACGAGTTTATCAACTCTGTCAACAGACTCCGGCGAGCGATGGACTTTTTCATTTCGGAAAATTCCACCTCCCCTGTTCTTGTTCTAGCTCAACAGTTGATGCAGGCCGCCATGAGGCGACTTGAGAAGGAGTTTTACCAGATTTTGAGTGAGAATCACCAGAATTTGGACCCTGAATCTATCTCCAGTAGGTCCTCCGACCGGTCGACGGCCGACGGGGAGACCAGTGATTTGATTACAGAGTTCAATAGAGTTTCAGCGGATTTGAAATCGATTGCTGATTGTATGATCGATTCTGGGTATGGGAAAGAATGCGTTAAAATCTATAAAGTGATCCGAAAATCGATCGTTGATGAAACTCTGTACCGTCTCGGAACAGAGAAATTCAAAATTTCGAAAATTATGAGATGGAATTGGGATTCACTCGAGCACGTGATCAAGAATTGGATGAACTCAATTAAGATCGCTGTGAATACTCTGTTTCGTGGCGAGAAAATTCTCTGTGATCATGTTTTTTCGCGATCGGAAATGATCAGAGAGTCCTGTTTTTCCGAGATCACAAAAGATGGTGCAATCGCTTTATTCAGATTCCCGGAATTGATCGCAAAAGGGAAGAAAGATTCCGACAAAATCTTTTTGTTGATGGAGCTTTACGAGGCGAATTCCGACGTATTGCCGGAAATTGAAGTCATATTCGACTCTGTTTCTACATCCGCCGTTAAAACGCAAGCTCAAAGGTCAATGGAGAAACTTGCAGATTCAATCCGCGATATTCTCTCTGAATTCGGTTCGACAATTCAAAAAGATTCGTTGAAAAACCCAGCTCCCGGCGGCGGAATCCACCTACTAACCCGATCGGCAATGAACTACATTTCGTCTCTCGGCGACTACGCCGGAACCCTCTCCGACATACTCACCGCCGAAAACTCTCCAATTCCATCGTCGTACATGGAAACCATCGGTGCAGACGACGCGCTATCATCACCGGTAGCAGCTCAATTGGGGTGGCTGATTTTGGTCCTCCTCTGCAAACTTGACACAAAAGCAGAGCTGTACAAAGACGTATCGTTGTCGTACCTATTTCTGGCGAACAACCTGAATTTCATCGTGAAGACGGTGGCGACGACGAATTTGAATACGTTGGTAGGCACCGAGTGGGTGACGAACCACAGGAGCAAGGTGAAGGTGTACGCAGCGAAGTACGAAGCGACGGCTTGGAACAGAGTGGTGAATTCGCTACCGGAAAGTTGGTCGGAGGAGACAGCGGCGGAGGGGTTGAAGAGGTTCAATGAGGCGTTTGAAGAGGCGTATCGGAAGCAGATATCGTGGAGAGTGGAGGATGGAAATTTGAGAGATGAATTGAAGACGGCGATAGCCAAGAAGGTGGTGCCGATTTACAGAGAGTTCTACGAGGGGTGTGTTGAGAAGGTGAATGTGGGTGTAGAAAGGAATGATTTTGGGAAAGCTTTTGGTGTGAGATTTTCTCCCGATGATTTGGGGAATTATTTGTCGGATTTGTTCCATGGGGTTTCTCTTTCTTCTTCGCAAAAGGCCTAA 1833 46.64 MILSEAPKSNNNTKLMHIKEFFGFSHSSSSKSLHSFQSSDRRKLPPSTYDSSKSAAMEEAIVNSQPIITKWDPDSSEFNRITFLFRHGRAESDEFINSVNRLRRAMDFFISENSTSPVLVLAQQLMQAAMRRLEKEFYQILSENHQNLDPESISSRSSDRSTADGETSDLITEFNRVSADLKSIADCMIDSGYGKECVKIYKVIRKSIVDETLYRLGTEKFKISKIMRWNWDSLEHVIKNWMNSIKIAVNTLFRGEKILCDHVFSRSEMIRESCFSEITKDGAIALFRFPELIAKGKKDSDKIFLLMELYEANSDVLPEIEVIFDSVSTSAVKTQAQRSMEKLADSIRDILSEFGSTIQKDSLKNPAPGGGIHLLTRSAMNYISSLGDYAGTLSDILTAENSPIPSSYMETIGADDALSSPVAAQLGWLILVLLCKLDTKAELYKDVSLSYLFLANNLNFIVKTVATTNLNTLVGTEWVTNHRSKVKVYAAKYEATAWNRVVNSLPESWSEETAAEGLKRFNEAFEEAYRKQISWRVEDGNLRDELKTAIAKKVVPIYREFYEGCVEKVNVGVERNDFGKAFGVRFSPDDLGNYLSDLFHGVSLSSSQKA 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6195824 6197656 - CmaCh04G012150.1 Cma04g01215 292296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01215 610 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 28 607 - -
Cma04g01215 610 Pfam Exo70 exocyst complex subunit 239 597 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma04g01215 610 MobiDBLite consensus disorder prediction 148 167 - -
Cma04g01215 610 Gene3D Exocyst complex component Exo70 67 609 - -
Cma04g01215 610 PANTHER EXOCYST COMPLEX PROTEIN EXO70 28 607 IPR004140 GO:0000145|GO:0006887
Cma04g01215 610 MobiDBLite consensus disorder prediction 27 54 - -
Cma04g01215 610 SUPERFAMILY Cullin repeat-like 84 600 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01215 Cma-Chr4:6195824 Cma13g00158 Cma-Chr13:1194052 1.96E-170 dispersed
Cma14g00174 Cma-Chr14:721043 Cma04g01215 Cma-Chr4:6195824 1.14E-175 wgd
Cma02g00839 Cma-Chr2:4890955 Cma04g01215 Cma-Chr4:6195824 1.30E-176 wgd
Cma20g00434 Cma-Chr20:2052399 Cma04g01215 Cma-Chr4:6195824 9.98E-157 wgd
Cma04g00244 Cma-Chr4:1187698 Cma04g01215 Cma-Chr4:6195824 0 wgd
Cma04g01215 Cma-Chr4:6195824 Cma07g00959 Cma-Chr7:4628775 8.99E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01215 K07195 - csv:101221801 981.859