Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01230 ATGGTATCAGAAACTTTGATGAAGATTGTATCACCTTGCTGGAAACCTTCTGTTGAAGGTGAAAATTCCAGCAGAGGTGGGGATGCGAGTGGTCGGGTTGATGGATTGTTATGGTACAAGGATTCTGGCCGCCATATTAATGGGGAATTCTCAATGGCTGTTATTCAGGCAAATAATTTGTTGGAAGATCGTAGCCAACTCGAGTCAGGGCCACTGAGCTCATTTGAATCAGGTCCCATTGGGACGTTCGTTGGAATCTATGATGGCCATGGAGGACCTGAAGCTGCAGAATTCATAAGTGATCGTCTGTTCAATAATATGAAGACTTTTCATGGTGCAGAATTTATTCCAGAAAATCGGGGAGTATCTGCTGAAATTATAAACAAAGCATTCTTGGAGACAGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTAGTAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCCATCCAATTGTCATCTGAGCACAATGCTAGTATTGAATCTGTGCGAGAGGAGCTGCACTCGTTGCATCCCGGTGATCCGCAGATCGTTGTGCTAAAGCACAAGGTGTGGCGCGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTACCTGAAGAAAACAGAGTTCAACCGAGAGCCTCTCTTGCCCAAGTTCAGATTACCAGAACCATTCCACAAGCCTATTCTTAAAGCCGAGCCTGCTATTGTAGTGCAGAAACTGTATCCGGAGGATCAGTTCCTTATCTTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGATATCGTCCATAGTTGTCCACGTAACGGGGTTGCAAGGAAACTGGTTAAAGCGGCTCTTCACGGAGCTGCAAAGAAAAGAGAAATGAGATACACAGACTTGAAGAAGATCGACCGCGGGCGTGCACCAAGAACTGCTCATAATATTATCATAATCATGGCGACTTGGACACTGGGCAGCCCCATCGGCGTCTCACACCCATCGTCTTGCTCAGATGTTTCACTTCCTTGCATTCCGTTTTCATCCCGGAGATTAAGCTTCTCCAGCATCATTATTTCTCCTCTTAAGCTTCAAAGACAAGTATCTCGAAGAAGAGTCAGACCTGTAATTTCTGTGAAAATGGCTGCTGCTGAAGCTTTTCAGGAAGTTCTTCCTCCAGCCCTCACTTCTGCTTCAGAACCACCTCCCATCTTTGATGGAACAACGAGGCTTTACATATCTTATACATGCCCTTATGCGCAGCGTGTCTGGATTACTCGGAACTGTAAGGTGCCAGCTCTTGAACATAATAATGAAGTCAAAGGAGAGAGTCTTGACTTAATTAGATATATTGACAGCAATTTTGAGGGGCCTTCATTATTTCCTGAGGATCAGGGAAGGAGAGAGTTTGCTGAAGAATTGATGAACTACGTGAACTCTTTCAGGGGATCCGTGGTGTCTTCATTTAAAGGAGATCGAAATGAAGCTGTAAAAACATATGATATCACGGCTGGCAGGCCAAAGCTGGCAGCTTGGATTGAGGAGATGAACAAGATCGAGGGTTACCAACAAACGAAGGGCGACCCACGGGAGCATGTTGATAACTTTAGGAAGCGGTTTTTGAGCCCTTCGTGA 1752 44.46 MVSETLMKIVSPCWKPSVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPIGTFVGIYDGHGGPEAAEFISDRLFNNMKTFHGAEFIPENRGVSAEIINKAFLETEEEFLSLVKKQWLSKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPGDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGVARKLVKAALHGAAKKREMRYTDLKKIDRGRAPRTAHNIIIIMATWTLGSPIGVSHPSSCSDVSLPCIPFSSRRLSFSSIIISPLKLQRQVSRRRVRPVISVKMAAAEAFQEVLPPALTSASEPPPIFDGTTRLYISYTCPYAQRVWITRNCKVPALEHNNEVKGESLDLIRYIDSNFEGPSLFPEDQGRREFAEELMNYVNSFRGSVVSSFKGDRNEAVKTYDITAGRPKLAAWIEEMNKIEGYQQTKGDPREHVDNFRKRFLSPS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6275107 6283575 + CmaCh04G012300.1 Cma04g01230 292311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01230 583 SUPERFAMILY PP2C-like 58 328 IPR036457 -
Cma04g01230 583 Gene3D - 39 363 IPR036457 -
Cma04g01230 583 SUPERFAMILY GST C-terminal domain-like 494 579 IPR036282 -
Cma04g01230 583 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
Cma04g01230 583 CDD PP2Cc 50 326 IPR001932 -
Cma04g01230 583 Pfam Protein phosphatase 2C 82 329 IPR001932 -
Cma04g01230 583 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 359 - -
Cma04g01230 583 PANTHER ALPHABET, ISOFORM E-RELATED 8 359 - -
Cma04g01230 583 Gene3D - 496 535 - -
Cma04g01230 583 Gene3D - 536 582 - -
Cma04g01230 583 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Cma04g01230 583 SUPERFAMILY Thioredoxin-like 437 499 IPR036249 -
Cma04g01230 583 Gene3D Glutaredoxin 469 495 - -
Cma04g01230 583 Gene3D Glutaredoxin 421 468 - -
Cma04g01230 583 SMART PP2C_4 41 360 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01230 Cma-Chr4:6275107 Cma06g00132 Cma-Chr6:683929 1.45E-164 dispersed
Cma06g00341 Cma-Chr6:1583631 Cma04g01230 Cma-Chr4:6275107 2.65E-53 dispersed
Cma06g00342 Cma-Chr6:1588222 Cma04g01230 Cma-Chr4:6275107 1.67E-55 dispersed
Cma14g00181 Cma-Chr14:756985 Cma04g01230 Cma-Chr4:6275107 4.21E-168 wgd
Cma04g00254 Cma-Chr4:1239018 Cma04g01230 Cma-Chr4:6275107 1.07E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01230 K01102 - csv:101220760 668.692