Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01234 | ATGGGATGGTTTCTCTGTACTGGAGGTTCAAATAAGAGGGGAAAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGGTTCAGAAGAAGGACGATGATCCGATCCCATCGGCTTCAGAAAAGTTAATGGTTAAGCCGATATTTAATGGGAAGAACGAGGCTCTAAAAGATGAAGGTTCTGATCAGATTGCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCCGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGGAACAGGGAATTTCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTACTGTGCGGATGGCGATCAAAGACTCTTGGTTTATGAATACATGCCACTGGGATCGTTGGAAGACCATCTACATGATCTCCCACCCGATAAGAAACGACTTGATTGGAATATAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTACTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAAATTACCATCCTAAGCTATCCGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCTACAAGAGTGATGGGAACGTATGGATACTGTGCTCCTGAATATGCAATGACAGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTGCTTGAAATTATTACCGGCAGAAAAGCTATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGTAGCACAACCCTTATTTAAAGACAGAAGGAAGTTTCCACAGATGGCCGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGTCCCCTCATCGCCGATGTCGTCACGGCCCTCACATATCTTGCCTCCCAAAAATGCGATCCTGAAACGCAACCAGTTCAAAGCGCCCGCAGTAGCTTGTCCACACCTAGATCTTCTAGAAGAGAACTGTGA | 1167 | 44.47 | MGWFLCTGGSNKRGKQQQQQQQQQQVQKKDDDPIPSASEKLMVKPIFNGKNEALKDEGSDQIAAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNIRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGENYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWVAQPLFKDRRKFPQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKCDPETQPVQSARSSLSTPRSSRREL | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6306340 | 6310667 | + | CmaCh04G012340.1 | Cma04g01234 | 292315 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01234 | 388 | PIRSF | TyrPK_CSF1-R | 169 | 284 | - | - | |
Cma04g01234 | 388 | PIRSF | TyrPK_CSF1-R | 318 | 385 | - | - | |
Cma04g01234 | 388 | PIRSF | TyrPK_CSF1-R | 82 | 177 | - | - | |
Cma04g01234 | 388 | PIRSF | TyrPK_CSF1-R | 2 | 46 | - | - | |
Cma04g01234 | 388 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cma04g01234 | 388 | Gene3D | Transferase(Phosphotransferase) domain 1 | 158 | 379 | - | - | |
Cma04g01234 | 388 | ProSitePatterns | Protein kinases ATP-binding region signature. | 87 | 110 | IPR017441 | GO:0005524 | |
Cma04g01234 | 388 | Pfam | Protein tyrosine and serine/threonine kinase | 86 | 296 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g01234 | 388 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 204 | 216 | IPR008271 | GO:0004672|GO:0006468 | |
Cma04g01234 | 388 | Gene3D | Phosphorylase Kinase; domain 1 | 52 | 157 | - | - | |
Cma04g01234 | 388 | MobiDBLite | consensus disorder prediction | 367 | 381 | - | - | |
Cma04g01234 | 388 | ProSiteProfiles | Protein kinase domain profile. | 81 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01234 | 388 | PANTHER | OS07G0668900 PROTEIN | 15 | 383 | - | - | |
Cma04g01234 | 388 | MobiDBLite | consensus disorder prediction | 367 | 388 | - | - | |
Cma04g01234 | 388 | SMART | serkin_6 | 81 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01234 | 388 | CDD | STKc_IRAK | 87 | 357 | - | - | |
Cma04g01234 | 388 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 377 | IPR011009 | - | |
Cma04g01234 | 388 | PANTHER | OS07G0668900 PROTEIN | 15 | 383 | - | - | |
Cma04g01234 | 388 | MobiDBLite | consensus disorder prediction | 10 | 31 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g00257 | Cma04g01234 | ECH | |
Cma04g01234 | Cma04g00257 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01234 | Cma-Chr4:6306340 | Cma06g01475 | Cma-Chr6:9381522 | 0 | dispersed | |
Cma14g00183 | Cma-Chr14:761708 | Cma04g01234 | Cma-Chr4:6306340 | 0 | wgd | |
Cma20g00451 | Cma-Chr20:2135318 | Cma04g01234 | Cma-Chr4:6306340 | 4.66E-148 | wgd | |
Cma04g00257 | Cma-Chr4:1266414 | Cma04g01234 | Cma-Chr4:6306340 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68499 | PF07714 | PK_Tyr_Ser-Thr | 3.90E-46 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01234 | - | - | csv:101221705 | 684.485 |