Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01234 ATGGGATGGTTTCTCTGTACTGGAGGTTCAAATAAGAGGGGAAAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGGTTCAGAAGAAGGACGATGATCCGATCCCATCGGCTTCAGAAAAGTTAATGGTTAAGCCGATATTTAATGGGAAGAACGAGGCTCTAAAAGATGAAGGTTCTGATCAGATTGCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCCGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGGAACAGGGAATTTCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTACTGTGCGGATGGCGATCAAAGACTCTTGGTTTATGAATACATGCCACTGGGATCGTTGGAAGACCATCTACATGATCTCCCACCCGATAAGAAACGACTTGATTGGAATATAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTACTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAAATTACCATCCTAAGCTATCCGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCTACAAGAGTGATGGGAACGTATGGATACTGTGCTCCTGAATATGCAATGACAGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTGCTTGAAATTATTACCGGCAGAAAAGCTATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGTAGCACAACCCTTATTTAAAGACAGAAGGAAGTTTCCACAGATGGCCGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGTCCCCTCATCGCCGATGTCGTCACGGCCCTCACATATCTTGCCTCCCAAAAATGCGATCCTGAAACGCAACCAGTTCAAAGCGCCCGCAGTAGCTTGTCCACACCTAGATCTTCTAGAAGAGAACTGTGA 1167 44.47 MGWFLCTGGSNKRGKQQQQQQQQQQVQKKDDDPIPSASEKLMVKPIFNGKNEALKDEGSDQIAAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNIRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGENYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWVAQPLFKDRRKFPQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKCDPETQPVQSARSSLSTPRSSRREL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6306340 6310667 + CmaCh04G012340.1 Cma04g01234 292315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01234 388 PIRSF TyrPK_CSF1-R 169 284 - -
Cma04g01234 388 PIRSF TyrPK_CSF1-R 318 385 - -
Cma04g01234 388 PIRSF TyrPK_CSF1-R 82 177 - -
Cma04g01234 388 PIRSF TyrPK_CSF1-R 2 46 - -
Cma04g01234 388 MobiDBLite consensus disorder prediction 1 35 - -
Cma04g01234 388 Gene3D Transferase(Phosphotransferase) domain 1 158 379 - -
Cma04g01234 388 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Cma04g01234 388 Pfam Protein tyrosine and serine/threonine kinase 86 296 IPR001245 GO:0004672|GO:0006468
Cma04g01234 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Cma04g01234 388 Gene3D Phosphorylase Kinase; domain 1 52 157 - -
Cma04g01234 388 MobiDBLite consensus disorder prediction 367 381 - -
Cma04g01234 388 ProSiteProfiles Protein kinase domain profile. 81 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01234 388 PANTHER OS07G0668900 PROTEIN 15 383 - -
Cma04g01234 388 MobiDBLite consensus disorder prediction 367 388 - -
Cma04g01234 388 SMART serkin_6 81 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01234 388 CDD STKc_IRAK 87 357 - -
Cma04g01234 388 SUPERFAMILY Protein kinase-like (PK-like) 69 377 IPR011009 -
Cma04g01234 388 PANTHER OS07G0668900 PROTEIN 15 383 - -
Cma04g01234 388 MobiDBLite consensus disorder prediction 10 31 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00257 Cma04g01234 ECH
Cma04g01234 Cma04g00257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01234 Cma-Chr4:6306340 Cma06g01475 Cma-Chr6:9381522 0 dispersed
Cma14g00183 Cma-Chr14:761708 Cma04g01234 Cma-Chr4:6306340 0 wgd
Cma20g00451 Cma-Chr20:2135318 Cma04g01234 Cma-Chr4:6306340 4.66E-148 wgd
Cma04g00257 Cma-Chr4:1266414 Cma04g01234 Cma-Chr4:6306340 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68499 PF07714 PK_Tyr_Ser-Thr 3.90E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01234 - - csv:101221705 684.485