Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01236 ATGATGATGTTGAATCTTAACGATTCGATTATGAACCGTGATGAAGCGACGACGGATCGGATCGTAATGGAGGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGATGAGGTCTGCAACAGCAGAGATGAAGAGTCCTCTGTTTTAATCTTCGATATTCTCAAGAAGGAAAGTCCCGGCGGCGTTGGCGGCGGCCCAGTTCCTGAATTAGTGACCCAGGCGCTTTTCCCGGTTGCCAGTGGGTGGGGAGATTCTGGGTCTCCAGTACTCAGGACCCAGTGGTTGAACCTGTCGCCGACGGCAAATTCTGGTGGCGGTGGAGGACAGCAGGAGCTGAAAGCTGTGCAGCCAAAACAACAGCAGGTGAGGAAGAGCCGCCGTGGGCCACGGTCCAGAAGCTCGCAGTACCGTGGTGTTACGTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGCGGGTTCGACACGGCCCATGCTGCAGCAAGGGCTTATGATCGAGCGGCTATAAAATTTAGAGGAGTCGATGCAGATATAAACTTCAACATAAGTGATTACGACGAAGATATGAAACAAACAAAGAATCTAAACAAAGAAGAGTTTGTGCATGTTCTACGCCGACAAAGTTCTGGAATTTCTCGTGGAGGATCAAAGCTAAGAGGACTATCTGTTCAAAAATATGGACGTTGGGAAACTCAAATGAATCAAATTATTGGAAAGAATGGAACTGAGGAAAGATCTGAGAGGTTCGAGACAACGGTGGAGGCAAGTAATGGAGGCAATGGACATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTTCTCAAAAGCTTGAGAGACCAAAGAATGAAAACAATGGCCATGCACATGGAATGGGTGGACAACAACCTAATACTCCTCCTTCCGTGTTCTCTTGTTTTTACTCCGCTTTTTTACCACTTAATCAGGAAAGAGGGAGAGAGACGAGAAACAAAGAGTCGACGAGTTGGAGATGGCAAACGGCGAGGTCGATAGAAGGAAATGTGAAGGAAGAAAAGAAGAAGAAGATAGAAAGCCATGGTTCCAAGAGTGCAGCATCATCAGGATTCTCTCCCTCTTATAATTTTGGTTCATTTTATGCTCAAAACAACACACCTCTCCACACTAATCACTGCCTTCCAACGCCTTACACCAATATTTCTTGA 1233 45.74 MMMLNLNDSIMNRDEATTDRIVMEDSETSNSSVVNADEVCNSRDEESSVLIFDILKKESPGGVGGGPVPELVTQALFPVASGWGDSGSPVLRTQWLNLSPTANSGGGGGQQELKAVQPKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQTKNLNKEEFVHVLRRQSSGISRGGSKLRGLSVQKYGRWETQMNQIIGKNGTEERSERFETTVEASNGGNGHNLDLSIGGIFNYHFSNSSQKLERPKNENNGHAHGMGGQQPNTPPSVFSCFYSAFLPLNQERGRETRNKESTSWRWQTARSIEGNVKEEKKKKIESHGSKSAASSGFSPSYNFGSFYAQNNTPLHTNHCLPTPYTNIS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6333575 6336695 + CmaCh04G012360.1 Cma04g01236 292317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01236 410 CDD AP2 136 194 IPR001471 GO:0003700|GO:0006355
Cma04g01236 410 SUPERFAMILY DNA-binding domain 135 194 IPR016177 GO:0003677
Cma04g01236 410 SMART rav1_2 136 198 IPR001471 GO:0003700|GO:0006355
Cma04g01236 410 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
Cma04g01236 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 391 - -
Cma04g01236 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 391 - -
Cma04g01236 410 MobiDBLite consensus disorder prediction 97 137 - -
Cma04g01236 410 MobiDBLite consensus disorder prediction 357 377 - -
Cma04g01236 410 Gene3D AP2/ERF domain 135 194 IPR036955 GO:0003700|GO:0006355
Cma04g01236 410 MobiDBLite consensus disorder prediction 97 123 - -
Cma04g01236 410 MobiDBLite consensus disorder prediction 291 315 - -
Cma04g01236 410 ProSiteProfiles AP2/ERF domain profile. 136 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01236 Cma-Chr4:6333575 Cma06g00347 Cma-Chr6:1612143 1.78E-66 dispersed
Cma14g00185 Cma-Chr14:775692 Cma04g01236 Cma-Chr4:6333575 4.16E-10 wgd
Cma02g00857 Cma-Chr2:5007350 Cma04g01236 Cma-Chr4:6333575 1.84E-64 wgd
Cma20g00457 Cma-Chr20:2186182 Cma04g01236 Cma-Chr4:6333575 1.26E-63 wgd
Cma04g00262 Cma-Chr4:1293232 Cma04g01236 Cma-Chr4:6333575 1.93E-174 wgd
Cma04g01236 Cma-Chr4:6333575 Cma07g00939 Cma-Chr7:4516453 4.97E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34844 PF00847 AP2 5.50E-10 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01236 K09284 - csv:101204131 547.354