Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01236 | ATGATGATGTTGAATCTTAACGATTCGATTATGAACCGTGATGAAGCGACGACGGATCGGATCGTAATGGAGGATTCGGAGACTTCGAATTCCTCCGTCGTTAATGCCGATGAGGTCTGCAACAGCAGAGATGAAGAGTCCTCTGTTTTAATCTTCGATATTCTCAAGAAGGAAAGTCCCGGCGGCGTTGGCGGCGGCCCAGTTCCTGAATTAGTGACCCAGGCGCTTTTCCCGGTTGCCAGTGGGTGGGGAGATTCTGGGTCTCCAGTACTCAGGACCCAGTGGTTGAACCTGTCGCCGACGGCAAATTCTGGTGGCGGTGGAGGACAGCAGGAGCTGAAAGCTGTGCAGCCAAAACAACAGCAGGTGAGGAAGAGCCGCCGTGGGCCACGGTCCAGAAGCTCGCAGTACCGTGGTGTTACGTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGCGGGTTCGACACGGCCCATGCTGCAGCAAGGGCTTATGATCGAGCGGCTATAAAATTTAGAGGAGTCGATGCAGATATAAACTTCAACATAAGTGATTACGACGAAGATATGAAACAAACAAAGAATCTAAACAAAGAAGAGTTTGTGCATGTTCTACGCCGACAAAGTTCTGGAATTTCTCGTGGAGGATCAAAGCTAAGAGGACTATCTGTTCAAAAATATGGACGTTGGGAAACTCAAATGAATCAAATTATTGGAAAGAATGGAACTGAGGAAAGATCTGAGAGGTTCGAGACAACGGTGGAGGCAAGTAATGGAGGCAATGGACATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTTCTCAAAAGCTTGAGAGACCAAAGAATGAAAACAATGGCCATGCACATGGAATGGGTGGACAACAACCTAATACTCCTCCTTCCGTGTTCTCTTGTTTTTACTCCGCTTTTTTACCACTTAATCAGGAAAGAGGGAGAGAGACGAGAAACAAAGAGTCGACGAGTTGGAGATGGCAAACGGCGAGGTCGATAGAAGGAAATGTGAAGGAAGAAAAGAAGAAGAAGATAGAAAGCCATGGTTCCAAGAGTGCAGCATCATCAGGATTCTCTCCCTCTTATAATTTTGGTTCATTTTATGCTCAAAACAACACACCTCTCCACACTAATCACTGCCTTCCAACGCCTTACACCAATATTTCTTGA | 1233 | 45.74 | MMMLNLNDSIMNRDEATTDRIVMEDSETSNSSVVNADEVCNSRDEESSVLIFDILKKESPGGVGGGPVPELVTQALFPVASGWGDSGSPVLRTQWLNLSPTANSGGGGGQQELKAVQPKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQTKNLNKEEFVHVLRRQSSGISRGGSKLRGLSVQKYGRWETQMNQIIGKNGTEERSERFETTVEASNGGNGHNLDLSIGGIFNYHFSNSSQKLERPKNENNGHAHGMGGQQPNTPPSVFSCFYSAFLPLNQERGRETRNKESTSWRWQTARSIEGNVKEEKKKKIESHGSKSAASSGFSPSYNFGSFYAQNNTPLHTNHCLPTPYTNIS | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6333575 | 6336695 | + | CmaCh04G012360.1 | Cma04g01236 | 292317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01236 | 410 | CDD | AP2 | 136 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01236 | 410 | SUPERFAMILY | DNA-binding domain | 135 | 194 | IPR016177 | GO:0003677 | |
Cma04g01236 | 410 | SMART | rav1_2 | 136 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01236 | 410 | Pfam | AP2 domain | 136 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01236 | 410 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 3 | 391 | - | - | |
Cma04g01236 | 410 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED | 3 | 391 | - | - | |
Cma04g01236 | 410 | MobiDBLite | consensus disorder prediction | 97 | 137 | - | - | |
Cma04g01236 | 410 | MobiDBLite | consensus disorder prediction | 357 | 377 | - | - | |
Cma04g01236 | 410 | Gene3D | AP2/ERF domain | 135 | 194 | IPR036955 | GO:0003700|GO:0006355 | |
Cma04g01236 | 410 | MobiDBLite | consensus disorder prediction | 97 | 123 | - | - | |
Cma04g01236 | 410 | MobiDBLite | consensus disorder prediction | 291 | 315 | - | - | |
Cma04g01236 | 410 | ProSiteProfiles | AP2/ERF domain profile. | 136 | 192 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01236 | Cma-Chr4:6333575 | Cma06g00347 | Cma-Chr6:1612143 | 1.78E-66 | dispersed | |
Cma14g00185 | Cma-Chr14:775692 | Cma04g01236 | Cma-Chr4:6333575 | 4.16E-10 | wgd | |
Cma02g00857 | Cma-Chr2:5007350 | Cma04g01236 | Cma-Chr4:6333575 | 1.84E-64 | wgd | |
Cma20g00457 | Cma-Chr20:2186182 | Cma04g01236 | Cma-Chr4:6333575 | 1.26E-63 | wgd | |
Cma04g00262 | Cma-Chr4:1293232 | Cma04g01236 | Cma-Chr4:6333575 | 1.93E-174 | wgd | |
Cma04g01236 | Cma-Chr4:6333575 | Cma07g00939 | Cma-Chr7:4516453 | 4.97E-10 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34844 | PF00847 | AP2 | 5.50E-10 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01236 | K09284 | - | csv:101204131 | 547.354 |