Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01239 ATGCCAGACTTAGGGTTACACAATCTTGCTGATATGGCGGAGCCTCCCACCAGTCCGCCCGGTGGCAGTCACGAGAGCGGCGGCGAGCAGAGCCCCATCACTGGTGGTGCTCGCGAACAGGACCGATTTCTTCCGATCGCTAACATTAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCTAAAGACGCTAAGGATACTGTCCAGGAATGCGTCTCCGAGTTCATTAGCTTCGTCACTAGCGAGGCGAGTGACAAGTGCCAGAAGGAAAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCAATGGCGACGTTGGGATTCGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGGTACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGCGGTGACGAATCTGCTAAAAGAGATGCAGTTGGGGCCATGCCTGGTCAAAATTCCCAGACCTTGATTTTGGTTGAACTATATGTGCAGCAATACATGCAGTCGGGAGCGTTGACTTACATTAACACCCAAGGACAGCATTTGATCATTCCTTCAATGCAGAATAATGAATAG 582 49.31 MPDLGLHNLADMAEPPTSPPGGSHESGGEQSPITGGAREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQTLILVELYVQQYMQSGALTYINTQGQHLIIPSMQNNE 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6346452 6351339 + CmaCh04G012390.1 Cma04g01239 292320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01239 193 Gene3D Histone, subunit A 34 158 IPR009072 GO:0046982
Cma04g01239 193 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 12 157 - -
Cma04g01239 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma04g01239 193 SUPERFAMILY Histone-fold 40 139 IPR009072 GO:0046982
Cma04g01239 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Cma04g01239 193 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cma04g01239 193 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cma04g01239 193 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Cma04g01239 193 MobiDBLite consensus disorder prediction 1 38 - -
Cma04g01239 193 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01239 Cma-Chr4:6346452 Cma06g00350 Cma-Chr6:1625029 2.48E-77 dispersed
Cma10g00260 Cma-Chr10:1156363 Cma04g01239 Cma-Chr4:6346452 7.97E-21 dispersed
Cma11g00251 Cma-Chr11:1269086 Cma04g01239 Cma-Chr4:6346452 4.97E-19 dispersed
Cma17g01111 Cma-Chr17:7785153 Cma04g01239 Cma-Chr4:6346452 4.42E-48 dispersed
Cma14g00188 Cma-Chr14:792274 Cma04g01239 Cma-Chr4:6346452 2.67E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34845 PF00808 CBFD_NFYB_HMF 5.20E-28 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01239 K08065 - csv:101223123 293.123