Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01242 ATGGCTTACTTGGCCAAATGTACTAATGCTCCCTCAACGCCGATCACTGTTTCAAACCACCCCTTATCTTACTCCCCTATCTCTTCTTCCTCCGCTGCCACCACCAATTTTGGTTCCCCACCCACATCTCAGCCGTCGTCTCCACCGCCGCCTGCGGTGATCCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCCTATTTCCCTCCGTCCGAGCCTCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTGCCAGAGTGTCAGAGGACAGATGCAGTGAGCAGTATGGTATACGAAGCACATGCGCGGCTGCGAGATCCAGTGTACGGCAGCGCCGGCGCTATTTGCCAGCTGCAAAAGCAAGTGAGCGAGCTGCAAGCCCAGCTAGCCAAGGCGAGGGCGGAGGTGGCTAATATGCAGCACCAACAAGCCAACTTACTGGCTTTGATTTGCATGGAAATGAGGCAATCGCCGGACCCCGTTTGGCCGCCGCAACTCCCCGACACTACCTGCTTCCTCGACGACGCCGCCCTTAGCTCGCCGTGGGAGCCACTTTGGACGTGA 627 57.26 MAYLAKCTNAPSTPITVSNHPLSYSPISSSSAATTNFGSPPTSQPSSPPPPAVILSPCAACKILRRRCVEKCVLAPYFPPSEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEAHARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQSPDPVWPPQLPDTTCFLDDAALSSPWEPLWT 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6371441 6372522 + CmaCh04G012420.1 Cma04g01242 292323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01242 208 Coils Coil 136 170 - -
Cma04g01242 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 187 - -
Cma04g01242 208 Pfam Lateral organ boundaries (LOB) domain 57 154 IPR004883 -
Cma04g01242 208 ProSiteProfiles LOB domain profile. 56 157 IPR004883 -
Cma04g01242 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 40 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00534 Cma-Chr1:2764711 Cma04g01242 Cma-Chr4:6371441 2.17E-73 dispersed
Cma04g01242 Cma-Chr4:6371441 Cma13g00195 Cma-Chr13:1537977 5.02E-73 dispersed
Cma02g00871 Cma-Chr2:5081153 Cma04g01242 Cma-Chr4:6371441 1.12E-66 wgd
Cma20g00467 Cma-Chr20:2255365 Cma04g01242 Cma-Chr4:6371441 2.09E-76 wgd
Cma04g00272 Cma-Chr4:1334411 Cma04g01242 Cma-Chr4:6371441 2.91E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34846 PF03195 LOB 1.10E-39 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01242 - - bhj:120081845 341.658