Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01259 ATGTCAAATTCCGATTCTGGCAACACCAATGGGGTCTCCAATGGCGCCGCCATTGATACCCACAAAAACCAGCCCTCTTCAAATGGAGCCCTCGTCGTCAAAAAGCCCCCCTCCAAGGACCGCCACAGCAAGGTTGATGGTCGTGGCCGCCGCATCCGTATGCCCATCATATGCGCCGCTCGAGTATTCCAGCTGACTCGAGAGCTTGGTCATAAGTCCGATGGCCAGACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCCTCTATTATTGCCGCCACTGGCACCGGCACTACCCCGGCTAATTTCTCCTCCGTCTCTCTTTCCGTCAGAGGAAATGGCGGCTCCACTTCTCTCTCTTCCCCTTCTTCCACCACTTCAACTCTCTCCCTCTCTCGCCCCCAGGCTCTCTCGGGCCCCACGCCGTTTATTCTCGGCAAGCGCGTCCGGTCCGATGACGACGGCGGTAAGGACGATGGGACGGGAGTGGGTCCGACTGGGCCAGGTGGGTACTGGGCGATTCCAGCGAGACCCGATTATGGACAGGTGTGGAGTTTTGCCGCGGCGGCTCCCTCGGAAATGGTGGTTCAACCTGGGGGGATTTCTCAACAAGCGTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAAGCATCAGCGGCGAGAGTGGGGAATTACCTTCCCGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGCGGTGGTTCTGGCCGGCGGGAAGATGACCCTCGCTGA 753 58.83 MSNSDSGNTNGVSNGAAIDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSTSLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGGKDDGTGVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6439273 6440025 + CmaCh04G012590.1 Cma04g01259 292340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01259 250 MobiDBLite consensus disorder prediction 110 169 - -
Cma04g01259 250 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
Cma04g01259 250 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 247 IPR005333 GO:0003700
Cma04g01259 250 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 247 - -
Cma04g01259 250 MobiDBLite consensus disorder prediction 1 31 - -
Cma04g01259 250 MobiDBLite consensus disorder prediction 110 136 - -
Cma04g01259 250 Pfam TCP family transcription factor 38 124 IPR017887 -
Cma04g01259 250 MobiDBLite consensus disorder prediction 35 50 - -
Cma04g01259 250 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01259 Cma-Chr4:6439273 Cma15g00788 Cma-Chr15:3930481 2.45E-86 dispersed
Cma18g00810 Cma-Chr18:7082679 Cma04g01259 Cma-Chr4:6439273 3.96E-111 wgd
Cma04g01259 Cma-Chr4:6439273 Cma04g02246 Cma-Chr4:15663375 8.01E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34847 PF03634 TCP 3.40E-33 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01259 K16221 - csv:101206050 382.104