Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01259 ATGTCAAATTCCGATTCTGGCAACACCAATGGGGTCTCCAATGGCGCCGCCATTGATACCCACAAAAACCAGCCCTCTTCAAATGGAGCCCTCGTCGTCAAAAAGCCCCCCTCCAAGGACCGCCACAGCAAGGTTGATGGTCGTGGCCGCCGCATCCGTATGCCCATCATATGCGCCGCTCGAGTATTCCAGCTGACTCGAGAGCTTGGTCATAAGTCCGATGGCCAGACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCCTCTATTATTGCCGCCACTGGCACCGGCACTACCCCGGCTAATTTCTCCTCCGTCTCTCTTTCCGTCAGAGGAAATGGCGGCTCCACTTCTCTCTCTTCCCCTTCTTCCACCACTTCAACTCTCTCCCTCTCTCGCCCCCAGGCTCTCTCGGGCCCCACGCCGTTTATTCTCGGCAAGCGCGTCCGGTCCGATGACGACGGCGGTAAGGACGATGGGACGGGAGTGGGTCCGACTGGGCCAGGTGGGTACTGGGCGATTCCAGCGAGACCCGATTATGGACAGGTGTGGAGTTTTGCCGCGGCGGCTCCCTCGGAAATGGTGGTTCAACCTGGGGGGATTTCTCAACAAGCGTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAAGCATCAGCGGCGAGAGTGGGGAATTACCTTCCCGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGCGGTGGTTCTGGCCGGCGGGAAGATGACCCTCGCTGA 753 58.83 MSNSDSGNTNGVSNGAAIDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSTSLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGGKDDGTGVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6439273 6440025 + CmaCh04G012590.1 Cma04g01259 292340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01259 250 MobiDBLite consensus disorder prediction 110 169 - -
Cma04g01259 250 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
Cma04g01259 250 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 247 IPR005333 GO:0003700
Cma04g01259 250 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 247 - -
Cma04g01259 250 MobiDBLite consensus disorder prediction 1 31 - -
Cma04g01259 250 MobiDBLite consensus disorder prediction 110 136 - -
Cma04g01259 250 Pfam TCP family transcription factor 38 124 IPR017887 -
Cma04g01259 250 MobiDBLite consensus disorder prediction 35 50 - -
Cma04g01259 250 MobiDBLite consensus disorder prediction 1 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01259 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 382.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01259 Cma-Chr4:6439273 Cma15g00788 Cma-Chr15:3930481 2.45E-86 dispersed
Cma18g00810 Cma-Chr18:7082679 Cma04g01259 Cma-Chr4:6439273 3.96E-111 wgd
Cma04g01259 Cma-Chr4:6439273 Cma04g02246 Cma-Chr4:15663375 8.01E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00788 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.9e-65 245.0
Cma04g01259 . 36 250 TCP Transcription Factor Family AT5G23280 61.8 2.2e-64 243.0
Cma04g02246 . 74 303 TCP Transcription Factor Family AT5G23280 59.9 9.4e-63 237.7
Cma18g00810 . 33 230 TCP Transcription Factor Family AT5G23280 57.6 2.6e-57 219.5
Cma04g01649 CCT,ECH 60 154 TCP Transcription Factor Family AT3G47620 88.7 5.7e-40 162.9
Cma13g01122 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.2e-39 161.0
Cma04g01856 . 129 211 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cma04g01856 . 129 221 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cma14g00730 . 49 316 TCP Transcription Factor Family AT3G27010 58.8 8.4e-61 231.5
Cma11g01520 . 32 276 TCP Transcription Factor Family AT3G27010 54.4 7.6e-54 208.4
Cma17g01429 . 37 254 TCP Transcription Factor Family AT3G27010 52.8 8.2e-48 188.3
Cma15g00788 . 10 255 TCP Transcription Factor Family AT5G08330 60.0 8.1e-64 241.1
Cma04g02246 . 40 302 TCP Transcription Factor Family AT5G08330 57.5 5.2e-63 238.4
Cma04g01259 . 8 248 TCP Transcription Factor Family AT5G08330 56.0 2.0e-62 236.5
Cma18g00810 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 3.0e-58 222.6
Cma11g00212 CCT 31 173 TCP Transcription Factor Family AT5G60970 58.6 1.6e-39 161.0
Cma14g01163 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 1.9e-37 154.1
Cma11g01924 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34847 PF03634 TCP 3.40E-33 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01259 Cma_Chr04 FPKM 43.122177 51.462971 29.179138 30.819279 37.735847 28.389147 32.969273 15.857834 15.940733 16.01112