Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01262 ATGGCTTCTAGGACTATGTCTCGGAAATCCCAGGTGATGCCTTCATTGCAAGCTACGAAATCCATGCCAGTTAATTCTCGGTTCATGATTCCGCAAACTGCTGAAACTTTGGAAGAGCCTTATCATCAGAATGTGAAAAACATGGAAGGTAGATCGATAGTTGATGGCGAAAATGGTGTTGCCAGAGATGATGGCGTCAATCGACTTCAATACAGTATGAACAATATTGATGAGCTGAATGAGGACTCACCATATAGTTACAATATTACAACAGTGGAAGAAAGACCCATCTTGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAATGTCGGCTTCACAGAGTGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTCAAGTCTTGGTTTAAACTTCCAAATGGAAATTGGGATCTTGTAAAGATACTGTCAACGGCGGGAACAGAGTCAGTTGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAGATTTGATTCCTGCAAATCCGGATATCCTTGATGGCGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGACCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAATGATTACATTGAAGCATATAAGCGCAAAACAATTGAGAGCCCACACGTATACGCCATTACGGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGCGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCGGCTCTCGGCGGTGGAAGTGGAATAGAATACGAGATATTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCGAGCCGTTTTGGAAAATTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCCGGGGCAAATATTCAAACTTGTAAGCTTTCCTGTAATTTGGACTCTGCATTGGTTTTCAATATGGTAAATCTGACTTTGATTGTTCTTTTCTTGATGAACCCCAAACAGTTTTGCTTGAAAAGACTACTTGAGAATGATATATTTCTTCAACAGTCCAGAGTTGTCCAATGCACAGAGGGAGAGAGGTCATACCACATCTTTTATCAACTTTGTAGTGGGGCTCCGCCTGCACTTAAAGAGAGGCTAAACTTGAGAAGAGCGGAAGAGTACAAATACCTCAGCCAGAGCAGTTGTATTTCAATAAGTAGAGTAAATGATGCGGAGGAGTTTCGTGTAGTCATGGAAGCACTAGATGTCGTACATATTAGTAAAGAAGACCAGCACAGTGTATTTGCAATGCTTGCTGCTGTTCTTTGGCTGGGAAATGTTTCCTTTAGTGTTATAGACAATGAAAATCATGTGGAGGCTGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTTATTGGGTGTGAGATTGAGGAGCTTAAACTAGCTCTATCAACTCGAAAAATGAGAATAGGGAACGACAGCATTGCAATTGACACTAGAGATGCTTTGGCAAAGTCAATTTACGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACAACTCTCTTGCTGTAGGCAAACGGCGCACTGGCAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAGTTCTGTATTAACTATGCAAATGAGAGACTGCAGCAGCATTTCAATCGTCATTTATTTAAGCTGGAGCAGGAGGAATATATTCAAGATGGAATCGACTGGGCAAAAGTTGATTTCGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGATGAGGAGTCTACTTTTCCAAATGGCACAGATGTGACCTTTGCGAACAAGCTTAAGCAGCATTTGGCACCCAATCCTTCTTTTAGAGGAGAACGAGAGAAAGCCTTCACTGTCTGTCATTATGCAGGAGAGGTCACTTATGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCCATACAACTCCTATCCTCATGTTCATGTCACCTTCCTCAAATTTTTGCATCCAACATGCTAACTCAATCGGGAAAGTCCATCGGTGGTCCTTTACATAAGTCTGGTGGTGCAGAATCCCAAAAACTAAGCGTCGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCACCGTCTTGAAAATACAACGCCCCATTTCATCCGTTGCATCAAGCCCAACAATGTTCAGTCTCCCAGATTGTCGGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGAGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCCACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTTCTTCTGCAAGAAAGCATTGCATCGCAGGATCCACTAAGTGTCTCAGTTGCGATTCTTCATCAATTCAATATATTGCCGGAAATGTACCAAGTTGGCTATACAAAATTGTTCTTCCGAACTGGACAGATTGGAAAGCTTGAAGATACAAGAAACCGCACCCTCCATGGGATTCTCTGTGTTCAAAGCTGTTATAGAGGGCACCTAGCTCGTCGCCATCTCAAAGAGCTGAAGAAAGGGATTTTCGTACTTCAGTCATTTGCACGTGGGGAGAAAACCAGAAAAGAATATGCAATCTTGATACGAAGGCATAGGGCTGCTATTTCTATTCAGAAGTGTGTGAAAGCCAGAATTGCTGAAAAACGTTTGAAGAAAGTCTGTGATGCATCACTTCTGATACAATCGGTTATCCGTGGCTGTTTGGTCAGGAGATGCTCAGGAGATATAGGATTAATGAAACCTGGTGGCCTGACGGCAAACGAGTCAGGTGAGGTGCTTGTTAAGGCATCATTCCTTTCAGAATTACAGCGCCGTGTCCTGAAGGCAGAGGCTGCTTTGAGAGAGAAAGAAGAGGAAAACGACATCCTCCATCAGCACCTCCAGCAGTACGAGAACCGTTGGTCAGAGTATGAGTTGAAAATGAAATCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCAAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCTGATGCATCAGTCAATGCAAGTGATGACAGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAACTAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGTGTCATTAGCCGCTTGGCCGAAGAATTCGAACAAAGAAGTCAAGTCTTCGGCGACGATGCCAAGTTCTTAGTAGAGGTAAAATCCGGTCAAGTCGAGGCAAGTCTTGATCCAGATAGGGAACTCAGAAGGTTGAAGCAGATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGCGAAACGAAAGTGATTTTAAATAAGCTTGGGAATGAAGGTGCCATGGATAGAGTGAAAAAGAAATGGTGGGGAAGGAGGAACAGCACAAGAATAACTCATGAATGGCTCATAAAGAAGATTTTGGGAGGGGGCTCACCTCAAGTTTTCTCTAGAACATTTGCGCCTCTCATTACTCCCCACTTGCCGCCTCCACTCGGTCCCAAGCGGCTGGCGATGTTGGCTGCCGGCGCACGCGTTTCTCACCACCTACGGGAGTGCGACTCTCAATTTGGCTTCGGATTAACCTCAGGCCTTACCTCCTTCCCCGTCGTTCTATTTCCTCCGATATGGTCTCGCAAGCCCACTTCTAATTTCCCTTCAATTTCTCGCCGCTCCCAACCACGTGGGGTTTCTTTCTTTTGCTCCATTATCCCCTCCACCTCCCCCGGAGAAATCCCCGTTATCTCCGATTCTGTTGGTTCACGAGAGGATGATCGTGAAGTCTCTGTGGCAGGAGGAATAGTAGCATTAGGAAAATTTGATGCTCTTCACGTTGGACATCGAGAGCTCGCAATTCAAGCTTCAACGGTTGGATCTCCATTTCTATTGTCATTTGTTGGAATTGCTGAAGTACTCGGTTGGGAACCTAGGCCTCCCATAGTGGCTCAATGTGATAGGAAGCGAGTACTTTCCTCATGGGCACCATACTGCCGAAACTCAGCTCCATCCGAATATCAGATTCAATTTTCAAGCGTGCGTTATCTAACTCCACGAGAATTTGTTGAGAAATTATCAAAGGAGCTTGGCGTTCGTGGAGTTGTTGCAGGTGAAAGCTATAGGTTTGGATATAAAGCAGCAGGTGATGCAGCTGAGCTAGTGAAACTGTGTGAGGAATATGGGTTAGGTGCTTATATTATAAAATCTGTGATGGACAGAAACCAAAAAGTTGTTAATTCTACCAATTCAATGGAGAGAGGACAAGTGTCATCTACTCGGGTTCGCTACGCCCTTTCCATAGGAGATATGAAGTATGTCTCTGAGCTTTTAGGCCGCAGACATCGCCTTATTTTGATGGCAAAAGGCCTAGAGGGATTAAGCAATAGCAATAGCAATAGCAGATTGTCTGCCCCAAAATCATGTTTGTTAAATTTAGCACCAAAAGAAGGTCTCTATAATAAGTGTTTCGTCTGTACAAGTGACGATGATCTAATCCCATGTCGGGTAGTTATTGACTCAACTCATGTTCACATAGAAATGGATGATATAGGCACACGTCATCCCGTAGGAACACAAAACTACTTAAGTGTTGAATTTGACCATGAAGGAGCATGA 4851 42.71 MASRTMSRKSQVMPSLQATKSMPVNSRFMIPQTAETLEEPYHQNVKNMEGRSIVDGENGVARDDGVNRLQYSMNNIDELNEDSPYSYNITTVEERPILDDGEDGFMPLPSPSMSASQSERRWGDTSSYTPRKILKSWFKLPNGNWDLVKILSTAGTESVVSLTDGKVLKVKAEDLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIEAYKRKTIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKLSCNLDSALVFNMVNLTLIVLFLMNPKQFCLKRLLENDIFLQQSRVVQCTEGERSYHIFYQLCSGAPPALKERLNLRRAEEYKYLSQSSCISISRVNDAEEFRVVMEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIGCEIEELKLALSTRKMRIGNDSIAIDTRDALAKSIYACLFEWLVEQINNSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDVTFANKLKQHLAPNPSFRGEREKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSGKSIGGPLHKSGGAESQKLSVARKFKGQLFQLMHRLENTTPHFIRCIKPNNVQSPRLSEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESIASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGKLEDTRNRTLHGILCVQSCYRGHLARRHLKELKKGIFVLQSFARGEKTRKEYAILIRRHRAAISIQKCVKARIAEKRLKKVCDASLLIQSVIRGCLVRRCSGDIGLMKPGGLTANESGEVLVKASFLSELQRRVLKAEAALREKEEENDILHQHLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTTNESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDRVKKKWWGRRNSTRITHEWLIKKILGGGSPQVFSRTFAPLITPHLPPPLGPKRLAMLAAGARVSHHLRECDSQFGFGLTSGLTSFPVVLFPPIWSRKPTSNFPSISRRSQPRGVSFFCSIIPSTSPGEIPVISDSVGSREDDREVSVAGGIVALGKFDALHVGHRELAIQASTVGSPFLLSFVGIAEVLGWEPRPPIVAQCDRKRVLSSWAPYCRNSAPSEYQIQFSSVRYLTPREFVEKLSKELGVRGVVAGESYRFGYKAAGDAAELVKLCEEYGLGAYIIKSVMDRNQKVVNSTNSMERGQVSSTRVRYALSIGDMKYVSELLGRRHRLILMAKGLEGLSNSNSNSRLSAPKSCLLNLAPKEGLYNKCFVCTSDDDLIPCRVVIDSTHVHIEMDDIGTRHPVGTQNYLSVEFDHEGA 1616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6450923 6467608 + CmaCh04G012620.1 Cma04g01262 292343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01262 1616 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 392 1211 - -
Cma04g01262 1616 SUPERFAMILY Nucleotidylyl transferase 1348 1525 - -
Cma04g01262 1616 SMART MYSc_2a 178 889 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 PANTHER MYOSIN 392 1211 - -
Cma04g01262 1616 Gene3D - 406 462 - -
Cma04g01262 1616 Gene3D Myosin VI head, motor domain, U50 subdomain 463 563 - -
Cma04g01262 1616 ProSiteProfiles Myosin motor domain profile. 184 888 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 Gene3D HUPs 1334 1525 IPR014729 -
Cma04g01262 1616 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 108 355 - -
Cma04g01262 1616 Gene3D - 822 889 - -
Cma04g01262 1616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 936 IPR027417 -
Cma04g01262 1616 MobiDBLite consensus disorder prediction 1079 1112 - -
Cma04g01262 1616 ProSiteProfiles IQ motif profile. 913 942 IPR000048 GO:0005515
Cma04g01262 1616 MobiDBLite consensus disorder prediction 1096 1112 - -
Cma04g01262 1616 PANTHER MYOSIN 108 355 - -
Cma04g01262 1616 SMART iq_5 912 934 IPR000048 GO:0005515
Cma04g01262 1616 SMART iq_5 889 911 IPR000048 GO:0005515
Cma04g01262 1616 SMART iq_5 938 960 IPR000048 GO:0005515
Cma04g01262 1616 SMART iq_5 961 983 IPR000048 GO:0005515
Cma04g01262 1616 Pfam Myosin head (motor domain) 392 876 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 Pfam Myosin head (motor domain) 186 350 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 PRINTS Myosin heavy chain signature 310 337 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 PRINTS Myosin heavy chain signature 268 293 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 PRINTS Myosin heavy chain signature 214 233 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 PRINTS Myosin heavy chain signature 627 655 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 PRINTS Myosin heavy chain signature 574 602 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 Gene3D Kinesin motor domain 392 821 IPR036961 -
Cma04g01262 1616 Gene3D - 893 940 - -
Cma04g01262 1616 Gene3D - 941 982 - -
Cma04g01262 1616 Coils Coil 1008 1056 - -
Cma04g01262 1616 Gene3D - 586 778 - -
Cma04g01262 1616 Pfam IQ calmodulin-binding motif 965 980 IPR000048 GO:0005515
Cma04g01262 1616 Pfam IQ calmodulin-binding motif 894 911 IPR000048 GO:0005515
Cma04g01262 1616 Gene3D Kinesin motor domain 179 357 IPR036961 -
Cma04g01262 1616 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 131 180 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma04g01262 1616 ProSiteProfiles IQ motif profile. 892 917 IPR000048 GO:0005515
Cma04g01262 1616 CDD MYSc_Myo8 198 876 IPR036022 -
Cma04g01262 1616 Pfam FAD synthetase 1345 1492 IPR015864 GO:0003919|GO:0009231
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01262 Cma-Chr4:6450923 Cma09g00895 Cma-Chr9:4423710 0 dispersed
Cma18g00812 Cma-Chr18:7103085 Cma04g01262 Cma-Chr4:6450923 2.83E-108 transposed
Cma18g00811 Cma-Chr18:7087234 Cma04g01262 Cma-Chr4:6450923 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01262 - K10357 csv:101222101 2113.19